Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0259g00210.t01 | |
| VIT_00s0956g00030.t01 | |
| VIT_03s0038g04240.t01 | nucleus |
| VIT_06s0004g08100.t01 | |
| VIT_08s0007g04770.t01 | |
| VIT_13s0019g01670.t01 | |
| VIT_14s0006g01820.t01 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH18559 | Soybean | nucleus | 24.12 | 71.06 |
| KRG93437 | Soybean | nucleus | 66.93 | 66.12 |
| KRH18561 | Soybean | nucleus | 41.95 | 64.41 |
| VIT_15s0024g01450.t01 | Wine grape | cytosol | 7.8 | 64.29 |
| Solyc02g067570.2.1 | Tomato | nucleus | 62.53 | 64.24 |
| Solyc02g087360.2.1 | Tomato | nucleus | 61.37 | 63.29 |
| Solyc02g087370.1.1 | Tomato | cytosol | 8.66 | 62.5 |
| PGSC0003DMT400003538 | Potato | nucleus | 60.36 | 61.61 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 64.12 | 61.2 |
| Bra006276.1-P | Field mustard | nucleus | 58.56 | 60.25 |
| CDX78604 | Canola | nucleus | 58.63 | 60.15 |
| CDX70587 | Canola | nucleus | 58.7 | 60.0 |
| CDX91007 | Canola | nucleus | 56.68 | 59.33 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.85 | 59.12 |
| AT5G15020.1 | Thale cress | nucleus | 58.34 | 59.11 |
| CDX85568 | Canola | nucleus | 56.97 | 59.06 |
| Bra023501.1-P | Field mustard | nucleus | 56.9 | 58.98 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 57.98 | 58.53 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 55.02 | 56.65 |
| CDY28683 | Canola | mitochondrion, nucleus | 54.73 | 56.31 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 16.75 | 45.31 |
| Solyc02g087390.1.1 | Tomato | cytosol | 15.6 | 42.44 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 4.91 | 36.56 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:100254234 | wikigene:100254234 | MapMan:12.3.2.4.2 | ProteinID:CCB58581 | ProteinID:CCB58581.1 |
| ncoils:Coil | UniProt:F6HV63 | EMBL:FN596252 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | EntrezGene:LOC100254234 | wikigene:LOC100254234 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | TIGR:TC68314 |
| UniParc:UPI000210A198 | ArrayExpress:VIT_14s0066g02330 | EnsemblPlantsGene:VIT_14s0066g02330 | EnsemblPlants:VIT_14s0066g02330.t01 | unigene:Vvi.4815 | RefSeq:XP_002281791 |
| RefSeq:XP_002281791.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:28545591..28557962
Molecular Weight (calculated)
156972.0 Da
IEP (calculated)
5.127
GRAVY (calculated)
-0.786
Length
1385 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRLRDDGYV GSQFKRPYGS SRGDSYGQPQ IPGGGGGGGG GGGGGGGGSM PKLTTTDALT YLKEVKEMFQ DQREKYDTFL EVMKDFKAQR TDTAGVIARV
0101: KELFKGHNNL IFGFNTFLPK GYEITLPEDE PPPKKTVEFE EAINFVNKIK KRFQNDDHVY KSFLDILNMY RRENKDIHEV YREVAVLFSD HKDLLEEFVR
0201: FLPESSAMHS AQHLPYGRNT IQRYDERNSS TPTLRQMHVD KQRCWRDKII PSHADRDSSI YRTDLDDDKA MMKIHKEQKR RTEKENRDRR NRDQDDREPS
0301: HENNRDFNLQ RLPEKRKSSR KVEGFGANPI LASYDDKDAL KSMCNQEFIF CEKVKEKLCS MDDYQAFLKC LHIYSKEIIS RSELQTLVAD LLGKYPDLMD
0401: GFNEFLERCE NIESLWDEGH LSRSMRAEEK DKEQKREMEG AKEKDRCREK YMGKSIQELD LSNCERCTPS YRLLPEDYPI AIAKERSELG AQVLNDQWVS
0501: VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVT SAAKHAEDLL NSISDNSVGS PIQIEGHLTV LNLRCIDRLY GDHALDALDT LRKNTSLALP
0601: VILSRLKQKH EEWSRCRSDF NKVWAEIYAK NHYKSLDHRS FYFKQQDSKN LSTKSLVAEI KELKEEKQNE DDMLLAIAAG NRRFVNPNLE FEYSDVNIHD
0701: DLYKLVQYSC EEVCTTNEQL NKVMRLWTTF LEPMLGVPSR VDREEGAEDV AKARHGAVKS SASSTGERDG SPGAEAAVMN SKQPNLASNG DENAIPESAN
0801: SCRASLVNGD SLPKDDHDSS HISKDDPPRL EKELKNVAAT EKISGFNIQV GSGEQLIDSN ASLATGAENN LGRAHMEVMS GHVSTPSRPG NVAIEEAHEH
0901: KPGFDASSEG GDVMRTVISA NGVLSEGTKL NKYHAESVGP SKIEKEEGEL SPNGDFEEDN FVVYGDASTQ AVPLAKHSSE RRQFQAGDGQ ERDCQVAGGE
1001: NGADADDEDS ENVSEAGEDV SASESAGDEC SRGEQEEEED AEHDELDGKA ESEGEADGVA DANFVGGNGV ILPLSERFLP TVKPLAKHVA SSLHDKEKND
1101: SRVFYGNDTF YVLFRLHRVL YERILSAKVN STSAEMKWRA SKDTNPPDFY SRFMSALYNL LDGSSDNAKF EDDCRAILGN QSYVLFTLDK LIYKLVKQLQ
1201: TVATDEMDNK LLQLYDYEKS RRSGKFVDSV YHENACVFLH DDNIYRFEYS SSPSRLSIQL MDSGSEKPEV VAVSMDPNFA AYLHNDFLSS RPSKKEPLGI
1301: MLQRNKHKYG GLDDLSATCL AMEDVHLVNG LECKIACTSS KISYVLDTED YFFRTRWKRR KLTGSEVSQR NWARVERFHR FLSAS
0101: KELFKGHNNL IFGFNTFLPK GYEITLPEDE PPPKKTVEFE EAINFVNKIK KRFQNDDHVY KSFLDILNMY RRENKDIHEV YREVAVLFSD HKDLLEEFVR
0201: FLPESSAMHS AQHLPYGRNT IQRYDERNSS TPTLRQMHVD KQRCWRDKII PSHADRDSSI YRTDLDDDKA MMKIHKEQKR RTEKENRDRR NRDQDDREPS
0301: HENNRDFNLQ RLPEKRKSSR KVEGFGANPI LASYDDKDAL KSMCNQEFIF CEKVKEKLCS MDDYQAFLKC LHIYSKEIIS RSELQTLVAD LLGKYPDLMD
0401: GFNEFLERCE NIESLWDEGH LSRSMRAEEK DKEQKREMEG AKEKDRCREK YMGKSIQELD LSNCERCTPS YRLLPEDYPI AIAKERSELG AQVLNDQWVS
0501: VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVT SAAKHAEDLL NSISDNSVGS PIQIEGHLTV LNLRCIDRLY GDHALDALDT LRKNTSLALP
0601: VILSRLKQKH EEWSRCRSDF NKVWAEIYAK NHYKSLDHRS FYFKQQDSKN LSTKSLVAEI KELKEEKQNE DDMLLAIAAG NRRFVNPNLE FEYSDVNIHD
0701: DLYKLVQYSC EEVCTTNEQL NKVMRLWTTF LEPMLGVPSR VDREEGAEDV AKARHGAVKS SASSTGERDG SPGAEAAVMN SKQPNLASNG DENAIPESAN
0801: SCRASLVNGD SLPKDDHDSS HISKDDPPRL EKELKNVAAT EKISGFNIQV GSGEQLIDSN ASLATGAENN LGRAHMEVMS GHVSTPSRPG NVAIEEAHEH
0901: KPGFDASSEG GDVMRTVISA NGVLSEGTKL NKYHAESVGP SKIEKEEGEL SPNGDFEEDN FVVYGDASTQ AVPLAKHSSE RRQFQAGDGQ ERDCQVAGGE
1001: NGADADDEDS ENVSEAGEDV SASESAGDEC SRGEQEEEED AEHDELDGKA ESEGEADGVA DANFVGGNGV ILPLSERFLP TVKPLAKHVA SSLHDKEKND
1101: SRVFYGNDTF YVLFRLHRVL YERILSAKVN STSAEMKWRA SKDTNPPDFY SRFMSALYNL LDGSSDNAKF EDDCRAILGN QSYVLFTLDK LIYKLVKQLQ
1201: TVATDEMDNK LLQLYDYEKS RRSGKFVDSV YHENACVFLH DDNIYRFEYS SSPSRLSIQL MDSGSEKPEV VAVSMDPNFA AYLHNDFLSS RPSKKEPLGI
1301: MLQRNKHKYG GLDDLSATCL AMEDVHLVNG LECKIACTSS KISYVLDTED YFFRTRWKRR KLTGSEVSQR NWARVERFHR FLSAS
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.