Factsheet for VIT_00s0956g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g02330.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47660.1	VIT_14s0066g02330.t01	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0259g00210.t01	Wine grape	nucleus	98.58	98.58
KRH36613	Soybean	nucleus	56.4	35.21
KRH11595	Soybean	nucleus	54.03	33.73
PGSC0003DMT400034607	Potato	nucleus	51.18	27.76
Solyc11g012720.1.1	Tomato	nucleus	52.13	27.23
AT5G47660.1	Thale cress	nucleus	39.81	21.11
Bra022149.1-P	Field mustard	nucleus	38.39	20.93
CDY28914	Canola	nucleus	37.91	20.67
CDY40550	Canola	nucleus	36.97	19.95
VIT_04s0044g00510.t01	Wine grape	nucleus	39.81	16.47
Bra024925.1-P	Field mustard	nucleus	25.12	16.21
CDY17716	Canola	nucleus	25.12	15.27
VIT_18s0072g00670.t01	Wine grape	nucleus	41.23	13.47
VIT_04s0008g01850.t01	Wine grape	nucleus	37.91	12.4
CDX77787	Canola	nucleus	36.49	11.99
VIT_02s0025g03220.t01	Wine grape	nucleus	41.23	11.85
VIT_14s0030g01860.t01	Wine grape	plastid	34.12	11.71
VIT_08s0007g03820.t01	Wine grape	nucleus	26.07	9.84
VIT_13s0074g00400.t01	Wine grape	nucleus	26.07	9.8

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100852457	wikigene:100852457	MapMan:15.5.20	ProteinID:CCB48466	ProteinID:CCB48466.1
UniProt:F6H8C3	EMBL:FN595315	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017877	EntrezGene:LOC100852457	wikigene:LOC100852457	InterPro:Myb-like_dom	PFAM:PF13837
PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF7	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000210A9C5	ArrayExpress:VIT_00s0956g00030	EnsemblPlantsGene:VIT_00s0956g00030	EnsemblPlants:VIT_00s0956g00030.t01	RefSeq:XP_003635505	RefSeq:XP_003635505.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:37120731..37121640

Molecular Weight (calculated)

24944.2 Da

IEP (calculated)

6.164

GRAVY (calculated)

-1.152

Length

211 amino acids

Sequence
(BLAST)

001: MHMQLIELLE KRERDRIVRE EAWKQQEMDR AKRYEEVRAQ ETSRSLALIS FIQNILGHEI HCPQSLENSS LEEEIQNQEI QNQRDLRYDP SNKRWPKSEV
101: QALITLRTTL DHKFRNMGAK GSIWEEISTG MSSMGYTRTA KKCKEKWENI NKYYRRSTGS GKKLPYFNEL DVLYKNGLIN PGNPSNNTNI DPCNSTKTEY
201: EDYEEEDTTK E

Best Arabidopsis Sequence Match ( AT5G47660.1 )
(BLAST)

001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.