Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003538 | |
| PGSC0003DMT400003545 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47660.1 | PGSC0003DMT400003538 | AT3G01320.1 | 19962994 |
| AT5G47660.1 | PGSC0003DMT400003545 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g012720.1.1 | Tomato | nucleus | 94.86 | 91.34 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 28.02 | 51.66 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 27.76 | 51.18 |
| KRH36613 | Soybean | nucleus | 37.02 | 42.6 |
| KRH11595 | Soybean | nucleus | 36.5 | 42.01 |
| AT5G47660.1 | Thale cress | nucleus | 27.51 | 26.88 |
| CDY40550 | Canola | nucleus | 26.99 | 26.85 |
| CDY28914 | Canola | nucleus | 26.22 | 26.36 |
| Bra022149.1-P | Field mustard | nucleus | 26.22 | 26.36 |
| Bra024925.1-P | Field mustard | nucleus | 19.02 | 22.63 |
| CDY17716 | Canola | nucleus | 19.02 | 21.33 |
| PGSC0003DMT400010112 | Potato | nucleus | 23.65 | 18.29 |
| PGSC0003DMT400080676 | Potato | nucleus | 19.54 | 16.31 |
| PGSC0003DMT400061942 | Potato | nucleus | 24.94 | 15.45 |
| CDX77787 | Canola | nucleus | 24.94 | 15.11 |
| PGSC0003DMT400007016 | Potato | nucleus | 19.28 | 13.84 |
| PGSC0003DMT400072404 | Potato | nucleus | 12.08 | 11.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034607 | EnsemblPlantsGene:PGSC0003DMG400013300 | EntrezGene:102600271 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 | PFAM:PF13837 | PFscan:PS50090 | PGSC:PGSC0003DMG400013300 |
| RefSeq:XP_006352450.1 | SEG:seg | UniParc:UPI0002966C81 | UniProt:M1B100 | MapMan:15.5.20 | : |
Description
Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400013300]
Coordinates
chr11:-:232812..235178
Molecular Weight (calculated)
44076.0 Da
IEP (calculated)
4.845
GRAVY (calculated)
-0.654
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPLIDGDGH TSNDITSFAD NLAPFPESTN VVYENPSAVI APTDIHRLPV SPVRKLRPVR FGNGRNYVDM VDSNCDIDEA LMTCTSDLGF LSQFSAQNAS
101: TVLPMECGFV NSLDENGVAR CSEAEISAVQ QMKSELDADC LNLISQSRIL EADFSSSSDD SEEHLPRKSL KLSLEDMVKK LMDRQEQMHK QLIEMLEKKE
201: EERIIREEAW KQQEVERARR DVELRAEETS RNLALIAFLE NLLGEDFQIP KSSEVTSVVK DEGEVHGDIR SDPCNRRWPK SEVQALVSVR TCLDHKFLKG
301: AKGSVWEEVA DGLGKMGYIR TAKKCKEKWE NINKYYKRTI DSGKTRPKNY RSCPYFHELD SLYKKGLLNQ GAGNCVKIET ENKNVDPEE
101: TVLPMECGFV NSLDENGVAR CSEAEISAVQ QMKSELDADC LNLISQSRIL EADFSSSSDD SEEHLPRKSL KLSLEDMVKK LMDRQEQMHK QLIEMLEKKE
201: EERIIREEAW KQQEVERARR DVELRAEETS RNLALIAFLE NLLGEDFQIP KSSEVTSVVK DEGEVHGDIR SDPCNRRWPK SEVQALVSVR TCLDHKFLKG
301: AKGSVWEEVA DGLGKMGYIR TAKKCKEKWE NINKYYKRTI DSGKTRPKNY RSCPYFHELD SLYKKGLLNQ GAGNCVKIET ENKNVDPEE
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.