CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY28683

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G47660.1	CDY28683	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17716	Canola	nucleus	49.84	92.22
CDY28914	Canola	nucleus	44.55	73.9
CDY40550	Canola	nucleus	44.86	73.66
AT5G47660.1	Thale cress	nucleus	42.06	67.84
VIT_00s0259g00210.t01	Wine grape	nucleus	12.31	37.44
VIT_00s0956g00030.t01	Wine grape	nucleus	11.99	36.49
KRH36613	Soybean	nucleus	15.73	29.88
KRH11595	Soybean	nucleus	15.58	29.59
Solyc11g012720.1.1	Tomato	nucleus	16.2	25.74
CDY44964	Canola	nucleus	15.26	25.45
PGSC0003DMT400034607	Potato	nucleus	15.11	24.94
CDX85980	Canola	nucleus	7.94	24.06
CDY45957	Canola	nucleus	17.76	23.36
CDY13568	Canola	nucleus	17.91	23.33
CDX93785	Canola	nucleus	20.25	22.07
CDY62151	Canola	nucleus	18.22	21.47
CDY71745	Canola	nucleus	18.85	21.15
CDY48546	Canola	nucleus	13.55	20.71
CDY65284	Canola	nucleus	17.13	19.86
CDY45955	Canola	nucleus	13.55	19.77
CDX88320	Canola	nucleus	16.36	19.3
CDX68080	Canola	nucleus	17.29	19.17
CDY48545	Canola	nucleus, plastid	16.2	18.31
CDX85981	Canola	nucleus	10.12	17.81
CDY52502	Canola	nucleus	14.8	15.91
CDY05590	Canola	nucleus	14.64	15.72
CDY52482	Canola	nucleus	14.64	15.51
CDX86194	Canola	nucleus	14.64	15.41
CDX70293	Canola	nucleus	13.55	15.24
CDX87564	Canola	nucleus	9.97	14.99
CDX80883	Canola	nucleus	11.21	14.12
CDY44379	Canola	nucleus	12.93	14.09
CDY10364	Canola	nucleus	10.75	13.61
CDY11266	Canola	nucleus	10.44	13.14
CDX87563	Canola	nucleus	1.4	13.04
CDY04893	Canola	nucleus	9.81	12.43
CDY45956	Canola	cytosol	1.09	9.86

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.20.10	MapMan:15.5.20	MapMan:15.5.51.2	GO:A0A078CM04	InterPro:CBFA_NFYB_domain
EnsemblPlants:CDX77787	ProteinID:CDX77787	ProteinID:CDX77787.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00128826001	InterPro:Histone-fold	InterPro:Homeobox-like_sf
InterPro:IPR009072	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF00808	PFAM:PF13837	PRINTS:PR00615
ScanProsite:PS00685	PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF7	SUPFAM:SSF46689	SUPFAM:SSF47113
InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI0004EE5C31	SEG:seg	:	:	:

Description

BnaC07g20410D

Coordinates

chrLK031812:+:1792295..1795192

Molecular Weight (calculated)

73182.0 Da

IEP (calculated)

7.807

GRAVY (calculated)

-0.800

Length

642 amino acids

Sequence
(BLAST)

001: MELLAGNCRK RPADDFAEDV DPFGSSEWMY GSRSLRTQGN DDALATLADL APPPQKLKPI RCVVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA
101: PLGSKIADVE ESGQLTRGFS KDEVEMEVRG RVSRRDGVSL SSSADSDSDS SQGGRKGKRK RKTREKMEHF VEKLVGSMMK RQEKMHNQLI KVMEKMEHER
201: IRSEEAWRQQ EIERMKQNEE ARMREMSRSS SIISFIKSVI GEEEDIEMPN LTIPLPKQCE SAHQRQGDDV KFVFPSGRRW PHEEVQALID SRSQVEEKTG
301: FHRVAIWDDV SAKMKERGYE RSAKKCKEKW ENMNKYYKRV VEGKKTQPEH SKTRSYFEKL GKLYKTNSVV EKEDILFSLS SSSLLQMILY LEHCFFYMHA
401: TNLKVVTLKK DMERGGFHGY RKFSLNTTNP SEPAKFLMAE GSMQLAEPNQ TNKTANGGEE ECTVREQDRF MPIANVIRIM RRILPAHAKI SDDSKETIQE
501: CVSEYISFIT GEANERCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTLYL HRYRELEGDR GVGYNAGSVG MTSGMVVKRP NGTMGEYGAY GVVPGMHMAP
601: YHYRHQKGYA YSGNEPDSKM GGPSSAANGS RVELFPTQQH KY

Best Arabidopsis Sequence Match ( AT5G47660.1 )
(BLAST)

001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.