Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015716.1-P | Field mustard | nucleus | 94.49 | 93.28 |
| CDX87563 | Canola | nucleus | 11.03 | 86.96 |
| CDX68080 | Canola | nucleus | 81.62 | 76.68 |
| CDY45955 | Canola | nucleus | 61.95 | 76.59 |
| CDY65284 | Canola | nucleus | 77.57 | 76.17 |
| CDY48545 | Canola | nucleus, plastid | 79.23 | 75.88 |
| CDX87564 | Canola | nucleus | 58.46 | 74.47 |
| AT1G76880.1 | Thale cress | nucleus | 81.8 | 73.8 |
| CDY45956 | Canola | cytosol | 8.64 | 66.2 |
| KRH70308 | Soybean | nucleus | 56.62 | 48.81 |
| CDY45957 | Canola | nucleus | 41.91 | 46.72 |
| CDY13568 | Canola | nucleus | 42.1 | 46.45 |
| KRH08699 | Soybean | nucleus | 55.88 | 46.41 |
| KRG91649 | Soybean | nucleus | 53.49 | 45.19 |
| KRH35149 | Soybean | nucleus | 54.23 | 44.23 |
| CDY48546 | Canola | nucleus | 33.82 | 43.81 |
| CDY62151 | Canola | nucleus | 38.42 | 38.35 |
| CDY71745 | Canola | nucleus | 38.42 | 36.54 |
| CDX93785 | Canola | nucleus | 38.97 | 35.99 |
| CDX85981 | Canola | nucleus | 23.71 | 35.34 |
| CDY44964 | Canola | nucleus | 24.08 | 34.03 |
| Zm00001d013849_P001 | Maize | nucleus | 43.93 | 30.76 |
| CDX85980 | Canola | nucleus | 11.95 | 30.66 |
| Zm00001d032453_P001 | Maize | nucleus | 43.57 | 30.23 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 44.67 | 29.74 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 44.67 | 29.74 |
| EER91374 | Sorghum | nucleus | 44.12 | 29.74 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 44.49 | 29.73 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 44.67 | 29.35 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 9.19 | 29.24 |
| TraesCSU01G029700.1 | Wheat | nucleus | 41.91 | 28.97 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 36.76 | 28.9 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 40.99 | 28.41 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 41.36 | 28.37 |
| KXG40355 | Sorghum | nucleus, plastid | 39.71 | 27.66 |
| Zm00001d027335_P001 | Maize | nucleus | 38.42 | 25.83 |
| CDY28914 | Canola | nucleus | 17.28 | 24.29 |
| CDY40550 | Canola | nucleus | 17.1 | 23.79 |
| CDY44379 | Canola | nucleus | 25.74 | 23.77 |
| CDX70293 | Canola | nucleus | 24.82 | 23.64 |
| CDX80883 | Canola | nucleus | 21.88 | 23.33 |
| CDY11266 | Canola | nucleus | 21.88 | 23.33 |
| CDY10364 | Canola | nucleus | 20.96 | 22.49 |
| CDY04893 | Canola | nucleus | 20.96 | 22.49 |
| CDY52502 | Canola | nucleus | 23.9 | 21.78 |
| CDY17716 | Canola | nucleus | 13.79 | 21.61 |
| CDY05590 | Canola | nucleus | 23.71 | 21.57 |
| CDY52482 | Canola | nucleus | 23.71 | 21.29 |
| CDX86194 | Canola | nucleus | 23.71 | 21.15 |
| CDX77787 | Canola | nucleus | 19.3 | 16.36 |
Protein Annotations
| EnsemblPlants:CDX88320 | EnsemblPlantsGene:GSBRNA2T00147827001 | Gene3D:1.10.10.60 | GO:A0A078DGG3 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF19 | PFAM:PF13837 | PFscan:PS50090 |
| ProteinID:CDX88320 | ProteinID:CDX88320.1 | SEG:seg | SMART:SM00717 | UniParc:UPI0004EEAC93 | MapMan:15.5.20 |
Description
BnaC06g37640D
Coordinates
chrLK031855:+:327951..330358
Molecular Weight (calculated)
61688.3 Da
IEP (calculated)
5.823
GRAVY (calculated)
-1.165
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGGGTTTT STTSEAPRPP QSNDAAAATE AAAAAATVGA FEVSEEMNDR GGFGGNRWPR QETVALLKIR SDMGIAFRDA SAKGPLWEEV SRKMGELGYI
101: RNAKKCKEKF ENVYKYHKRT KEGRTGKPEG KTYRFFDQLE ALETHHHQQH QPPQPQTQPP LRPHNNNSSM FSTPPPVTTT IIPPTTTPSF PNISGDFPSD
201: NSTSSSSSYS TSSDVDIGGG GRKKKRKRKW KEFFERLMKQ VVDKQEELQR QFLEAVEKRE RERLVREESW RAQEIARINR EREILAQERS MSAAKDAAVM
301: EFLQKFSEKP TAPPQQQPQV NNNNNQLQTS QPPPAPLPPQ PTLETAKTDN GDQTMTTPAS ASSSRWPKVE IEALIKLRTN LDSKYLENGP KGPLWEEISA
401: GMRRLGFNRN SKRCKEKWEN INKYFKKVKE SNKKRPQDSK TCPYFHQLDA LYRERNKFQT TTNINVASSS STKPDNSVPL MVQPEQQWPP ATDHPAQPLD
501: QSFDDEEGTD EEDYDDEEED EENEEEEGEF ELVPSNDNKT TNNV
101: RNAKKCKEKF ENVYKYHKRT KEGRTGKPEG KTYRFFDQLE ALETHHHQQH QPPQPQTQPP LRPHNNNSSM FSTPPPVTTT IIPPTTTPSF PNISGDFPSD
201: NSTSSSSSYS TSSDVDIGGG GRKKKRKRKW KEFFERLMKQ VVDKQEELQR QFLEAVEKRE RERLVREESW RAQEIARINR EREILAQERS MSAAKDAAVM
301: EFLQKFSEKP TAPPQQQPQV NNNNNQLQTS QPPPAPLPPQ PTLETAKTDN GDQTMTTPAS ASSSRWPKVE IEALIKLRTN LDSKYLENGP KGPLWEEISA
401: GMRRLGFNRN SKRCKEKWEN INKYFKKVKE SNKKRPQDSK TCPYFHQLDA LYRERNKFQT TTNINVASSS STKPDNSVPL MVQPEQQWPP ATDHPAQPLD
501: QSFDDEEGTD EEDYDDEEED EENEEEEGEF ELVPSNDNKT TNNV
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.