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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 2
  • cytosol 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G350500.1 nucleus
TraesCS1B01G364800.1 nucleus
TraesCS1D01G353300.1 nucleus
TraesCS3A01G282800.1 nucleus
TraesCS3B01G316500.1 nucleus
TraesCS3D01G282800.1 nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03680.1 TraesCS1A01G350500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1B01G364800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1D01G353300.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3A01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3B01G316500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3D01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1A01G350500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1B01G364800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1D01G353300.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3A01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3B01G316500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3D01G282800.1 AT3G01090.2 25697797
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G396900.1 Wheat nucleus 81.19 92.34
TraesCS5A01G558200.1 Wheat nucleus, plastid 91.23 91.47
HORVU4Hr1G089120.1 Barley nucleus, plastid 87.8 87.14
KXG40355 Sorghum nucleus, plastid 51.46 51.86
Zm00001d027335_P001 Maize nucleus 52.1 50.68
GSMUA_Achr8P11760_001 Banana endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 34.43 48.65
GSMUA_Achr11P... Banana nucleus 38.25 47.1
GSMUA_Achr4P24780_001 Banana nucleus 39.01 45.89
GSMUA_Achr1P04100_001 Banana nucleus 37.1 45.55
GSMUA_Achr5P19950_001 Banana nucleus, plastid 37.23 44.39
KRH35148 Soybean cytosol, mitochondrion, nucleus 10.93 43.65
GSMUA_Achr9P18800_001 Banana nucleus 31.51 42.98
GSMUA_Achr2P11910_001 Banana nucleus 34.18 42.03
Bra015716.1-P Field mustard nucleus 29.35 41.92
CDX88320 Canola nucleus 28.97 41.91
CDY45955 Canola nucleus 23.0 41.14
GSMUA_Achr4P29130_001 Banana nucleus 36.09 40.63
Bra008285.1-P Field mustard nucleus 28.21 40.0
CDY13568 Canola nucleus 24.9 39.76
CDY48545 Canola nucleus, plastid 28.59 39.61
VIT_04s0044g00510.t01 Wine grape nucleus 25.67 39.61
CDX68080 Canola nucleus 29.1 39.55
CDY45957 Canola nucleus 24.4 39.34
CDY65284 Canola nucleus 27.57 39.17
KRG91649 Soybean nucleus 31.64 38.66
AT1G76880.1 Thale cress nucleus 29.48 38.47
Bra003702.1-P Field mustard nucleus 22.24 38.21
KRH70308 Soybean nucleus 30.5 38.03
Solyc11g005380.1.1 Tomato nucleus 23.89 37.98
Bra003703.1-P Field mustard nucleus 29.35 37.68
VIT_18s0072g00670.t01 Wine grape nucleus 30.88 37.62
KRH08699 Soybean nucleus 31.26 37.56
GSMUA_Achr2P00580_001 Banana nucleus 33.42 37.52
KRH35149 Soybean nucleus 31.77 37.48
KRH53849 Soybean nucleus 23.63 37.42
Bra008286.1-P Field mustard nucleus 24.52 37.33
KRH38181 Soybean nucleus 23.13 37.14
PGSC0003DMT400061942 Potato nucleus 29.61 37.1
PGSC0003DMT400010112 Potato nucleus 23.63 36.98
KRH64101 Soybean nucleus 23.13 36.4
Solyc04g071360.2.1 Tomato nucleus 29.73 35.78
AT1G76890.2 Thale cress nucleus 25.29 34.61
Bra015715.1-P Field mustard nucleus 25.16 34.49
Solyc12g056510.1.1 Tomato nucleus 28.21 34.1
CDY48546 Canola nucleus 17.92 33.57
CDX87564 Canola nucleus 18.17 33.49
KRG91651 Soybean nucleus 26.68 33.33
KRH70307 Soybean nucleus 25.29 33.22
KRH08698 Soybean nucleus 25.92 33.12
VIT_13s0074g00400.t01 Wine grape nucleus 21.6 30.3
VIT_08s0007g03820.t01 Wine grape nucleus 21.22 29.87
KRH35147 Soybean nucleus 10.29 28.42
KRG96146 Soybean nucleus 20.58 28.03
KRH67857 Soybean nucleus 20.08 27.15
PGSC0003DMT400007016 Potato nucleus 18.42 26.75
Solyc09g009250.2.1 Tomato nucleus 18.3 26.52
PGSC0003DMT400072404 Potato nucleus 13.85 26.27
KRH32666 Soybean nucleus 19.7 26.09
Bra005777.1-P Field mustard nucleus 18.81 25.83
AT5G03680.1 Thale cress nucleus 19.06 25.38
CDY11266 Canola nucleus 16.26 25.1
CDX80883 Canola nucleus 16.14 24.9
CDX70293 Canola nucleus 17.92 24.69
CDY44379 Canola nucleus 18.42 24.62
Bra009518.1-P Field mustard nucleus 17.79 24.52
Bra028824.1-P Field mustard nucleus 18.3 24.41
CDY10364 Canola nucleus 15.5 24.06
CDY04893 Canola nucleus 15.25 23.67
KRH34733 Soybean nucleus 15.5 22.51
AT3G10000.1 Thale cress nucleus 13.72 22.45
KRG92051 Soybean nucleus 15.25 22.35
CDY45956 Canola cytosol 1.78 19.72
Protein Annotations
EnsemblPlants:TraesCSU01G029700.1EnsemblPlantsGene:TraesCSU01G029700Gene3D:1.10.10.60InterPro:IPR017877InterPro:Myb-like_domInterPro:SANT/Myb
ncoils:CoilPANTHER:PTHR21654PANTHER:PTHR21654:SF48PFAM:PF13837PFscan:PS50090SEG:seg
SMART:SM00717TIGR:cd12203MapMan:15.5.20:::
Description
No Description!
Coordinates
chrUn:+:28394897..28398201
Molecular Weight (calculated)
84024.6 Da
IEP (calculated)
7.191
GRAVY (calculated)
-0.760
Length
787 amino acids
Sequence
(BLAST)
001: MPPFSPAGWR GPAGAPSPIS SRPPAPAPAP AQQHQHQQQM DEQHGGAAVS GSGSGSVDGG EEGERGGSSS AAGGNRWPRQ ETLALLKIRS EMDAAFREAA
101: LKGPLWEQVS RRLAEMGHTR SAKKCREKFE NVDKYYRRTK DGRTGRGDGK TYRFFTELEA LHGASAAHHP QPAHVAVAPP AAPAASTIGA YSGVPSAPRV
201: LAPELSPPPL LLTQQPVPTE AAACLTTTTA AVGDASFSDD SDGEDTDETA DGGKRKRRGG SWGHGGKAMR FFEGLMRQVM ERQEAMQSRL LEAIERRDQD
301: RMIREEAWRR QEVARLAREQ DALAQERAVA ASRDAAVVSF IQRITGQIVP VHAPPSSFPA KPAATVTSVK PPPLQPTPVA SVAPAPPTPR PPVQAQPNVT
401: TPMRTQPQTP PPQPHATPTA TEPQPQTPQT QSKEIVVHAP EQLPVDMAGG CTGGASPSRW PKAEVHALIQ LRTEMETRYQ DTAPKGPLWE DISVGMRRLG
501: YNRSSKRCKE KWENINKYFK KVKESSRKRP EDSKTCPYFH QLDALYRTKA LASSSSSSGV HAPALAPAPS PARVEPAAVT VLSPVPLSSQ TPPPAAQHVE
601: HGAKNVITNG NGHGNGNGAA MQVKASNGSG AAAMFPSPVH AAGNAGNNNG TATNKLELKQ EGIAKETAPV QPAVAMNHSY GRNDRRDVYD LDSDSMDEDE
701: EDDFDDDDDD EEDDDAVPGG RNINMPPAQY DAHFLQRQHQ QQQHQNHNHN VVRPNAANGS GNPPAGNAAA SSAAAATSGT PFLAMVQ
Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Arabidopsis Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.