CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35148	Soybean	cytosol, mitochondrion, nucleus	29.21	93.4
KRH35147	Soybean	nucleus	40.16	88.77
KRH70307	Soybean	nucleus	62.86	66.11
KRH08698	Soybean	nucleus	64.29	65.75
CDY45957	Canola	nucleus	38.89	50.2
CDY13568	Canola	nucleus	38.89	49.7
Bra003702.1-P	Field mustard	nucleus	35.87	49.34
Bra008286.1-P	Field mustard	nucleus	39.84	48.55
AT1G76890.2	Thale cress	nucleus	42.86	46.96
KRH70308	Soybean	nucleus	46.98	46.91
CDY48546	Canola	nucleus	31.11	46.67
Bra015715.1-P	Field mustard	nucleus	42.22	46.34
KRH08699	Soybean	nucleus	46.98	45.19
KRG91649	Soybean	nucleus	44.6	43.63
KRH35149	Soybean	nucleus	45.87	43.33
KRH38181	Soybean	nucleus	30.16	38.78
KRH64101	Soybean	nucleus	30.16	38.0
KRH53849	Soybean	nucleus	29.84	37.83
KRH36613	Soybean	nucleus	16.67	31.07
KRH11595	Soybean	nucleus	16.35	30.47
Zm00001d032453_P001	Maize	nucleus	35.08	28.19
Zm00001d013849_P001	Maize	nucleus	34.6	28.06
TraesCS1D01G162400.1	Wheat	nucleus, plastid	36.03	27.78
TraesCS1A01G176700.2	Wheat	nucleus	35.87	27.66
TraesCS1B01G203300.2	Wheat	nucleus	35.71	27.64
EER91374	Sorghum	nucleus	35.4	27.63
KXG40355	Sorghum	nucleus, plastid	33.97	27.4
HORVU1Hr1G046940.4	Barley	nucleus	35.87	27.29
GSMUA_Achr8P11770_001	Banana	nucleus	7.3	26.9
TraesCS5A01G558200.1	Wheat	nucleus, plastid	33.49	26.88
TraesCSU01G029700.1	Wheat	nucleus	33.33	26.68
TraesCS4B01G396900.1	Wheat	nucleus	29.21	26.59
HORVU4Hr1G089120.1	Barley	nucleus, plastid	33.33	26.48
Zm00001d027335_P001	Maize	nucleus	32.38	25.22
KRG96146	Soybean	nucleus	22.22	24.22
KRH67857	Soybean	nucleus	22.06	23.88
KRH32666	Soybean	nucleus	22.22	23.57
KRH34074	Soybean	nucleus	21.27	23.06
KRH34733	Soybean	nucleus	18.73	21.77
KRG92051	Soybean	nucleus	18.41	21.6
KRG96954	Soybean	nucleus	20.16	21.17
KRH68714	Soybean	nucleus	20.63	20.87
KRG92655	Soybean	nucleus	21.9	20.57

Protein Annotations

EMBL:ACUP02012696	EnsemblPlants:KRG91651	EnsemblPlantsGene:GLYMA_20G166800	EntrezGene:100799041	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF50	PFAM:PF13837
PFscan:PS50090	ProteinID:KRG91651	ProteinID:KRG91651.1	SEG:seg	SMART:SM00717	UniParc:UPI00023DC121
UniProt:I1NH22	MapMan:15.5.20	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:40475256..40478971

Molecular Weight (calculated)

71235.7 Da

IEP (calculated)

5.751

GRAVY (calculated)

-1.013

Length

630 amino acids

Sequence
(BLAST)

001: MELIGDTTTV METSSGEAVA AHDGGEVIMM DANSGEEENN NKGEEGEEEE EGDNKINSNN NSLCGGNRWP RQETLALLKI RSDMDAVFRD SSLKGPLWEE
101: VARKLSELGY HRSAKKCKEK FENVYKYHKR TKESRSGKHE GKTYKFFDQL QALENQFTVS YSPKPQPTLA TTTNIITLPP PTRPSDTTAI SYVTTTVPST
201: NPTIISPSPQ PPTHATTTTT ITSPTVATNP KNPPQSNNNS NIPNYSLLNM NNLFSTTSTS SSTASDEDLE EKYRKKRKWK DYFRRLTRQV LAKQEEMQKR
301: FLEAIDNRER EQVAQQEAWR IQEMARINRE HELLVQERST AAAKNAAVIA FLQQLSGQHQ NSTTTKAGAN FLQQPLPQQV QPPPQQAPQP LMMSNNNNIE
401: IQKMNNGHSV VAAATPTTVV AATAIATTAV TTTPSSLSSL SSSRWPKTEV HALIRLRTSL EAKYQENGPK APFWEDISAG MLRLGYNRSA KRCKEKWENI
501: NKYFKKVKES NKQRREDSKT CPYFHELEAL YKEKSKTTQN PFGASFHNMK PHEMMEPLMV QPEQQWRPPT QYEQGAAKEN NNSERKEREE EEEEEDDDEN
601: EEGDLESVED EGGNRYEIAT NKLSSVDTVE

Best Arabidopsis Sequence Match ( AT1G76890.2 )
(BLAST)

001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT

Arabidopsis Description

GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.