CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34074	Soybean	nucleus	77.2	89.16
KRG96954	Soybean	nucleus	52.16	58.33
KRH68714	Soybean	nucleus	53.8	57.95
VIT_14s0030g01860.t01	Wine grape	plastid	45.6	49.76
CDY05590	Canola	nucleus	35.32	39.63
AT5G28300.1	Thale cress	nucleus	36.36	39.42
Bra009994.1-P	Field mustard	nucleus	35.77	39.34
CDX86194	Canola	nucleus	35.77	39.34
CDY52482	Canola	nucleus	35.32	39.11
CDY52502	Canola	nucleus	34.58	38.86
Bra020607.1-P	Field mustard	nucleus	34.87	38.49
KRH35148	Soybean	cytosol, mitochondrion, nucleus	9.69	32.99
KRH53849	Soybean	nucleus	20.57	27.77
KRH38181	Soybean	nucleus	20.12	27.55
KRH64101	Soybean	nucleus	19.97	26.8
KRH11595	Soybean	nucleus	12.67	25.15
KRH36613	Soybean	nucleus	12.67	25.15
KRH70308	Soybean	nucleus	22.35	23.77
KRG91649	Soybean	nucleus	22.8	23.76
KRH08699	Soybean	nucleus	22.95	23.51
KRH35149	Soybean	nucleus	22.65	22.79
KRH70307	Soybean	nucleus	19.97	22.37
Os02t0104500-01	Rice	nucleus	15.95	22.29
KRG91651	Soybean	nucleus	20.57	21.9
KRG96146	Soybean	nucleus	18.63	21.63
KRH08698	Soybean	nucleus	19.82	21.59
KRH67857	Soybean	nucleus	18.33	21.13
GSMUA_AchrUn_...	Banana	nucleus	6.71	21.03
GSMUA_Achr7P04610_001	Banana	nucleus	15.05	20.87
KRH32666	Soybean	nucleus	17.88	20.2
PGSC0003DMT400080676	Potato	nucleus	13.86	19.96
Zm00001d014938_P001	Maize	nucleus	19.08	19.28
GSMUA_Achr1P24120_001	Banana	nucleus	18.63	18.68
KRH34733	Soybean	nucleus	14.61	18.08
KRG92051	Soybean	nucleus	14.46	18.06
Zm00001d054080_P001	Maize	nucleus	18.93	17.79
EES06104	Sorghum	nucleus	19.52	17.7
HORVU0Hr1G014900.1	Barley	nucleus	18.48	17.54
TraesCS6A01G013200.2	Wheat	nucleus	19.37	17.26
TraesCS6B01G020100.1	Wheat	nucleus	19.52	17.21
TraesCS6D01G016300.1	Wheat	nucleus	19.37	17.17
KRH35147	Soybean	nucleus	7.15	16.84
Solyc08g061910.2.1	Tomato	nucleus	5.96	16.0
GSMUA_AchrUn_...	Banana	nucleus	10.43	14.93
GSMUA_AchrUn_...	Banana	nucleus	13.71	13.18

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100804367	MapMan:15.5.20	Gene3D:2.130.10.10	UniProt:A0A0R0EEU8	EMBL:ACUP02012765
EnsemblPlantsGene:GLYMA_20G224000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017877	InterPro:IPR017986	EnsemblPlants:KRG92655	ProteinID:KRG92655	ProteinID:KRG92655.1	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50082	PFscan:PS50090	PFscan:PS50294	PANTHER:PTHR21654	PANTHER:PTHR21654:SF22
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0006EDF9C7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:45848484..45855122

Molecular Weight (calculated)

77040.8 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.996

Length

671 amino acids

Sequence
(BLAST)

001: MVTDLIGSDD LTAKVWDYQT KSCVHTLEGH AYNASAVCFH PELPIIITGH KDGTERIWHS TTYGKEEVKK REVVTQNTNT NMFDGVPDQF HQFITPRTSL
101: PLHLPFPLHT SGGTPNTTTF PSNFDPYNHP HQLPLQPNNL LHPLHHKDED KEENTTVPMN LEIQRDQRQQ LPELIDPWNN DEVLALLRIR SSMESWFPEL
201: TWEHVSRKLA ELGYKRSAEK CKEKFEEESR YFNNINYGKN NNNNNNSSNY RFLSELEQLY HQGGSGDHHL ENTTQPPLQK QDKMGHHALE LEVEGDSRNV
301: VDALVTKQNE QSDEALAVEK ITKDRKRKRP DRFEMFKCFC ESIVHKIMAQ QEEMHNKLLE DMMKRDDEKF TREEAWKKQE IEKMNKELEM MAREQAIAGD
401: RQANIIQILN KFSATSSPAS HTLKKVNNDS NINTHITQNP NPSQTENPTL SVAQDTLQVI PSTSSTSTPA LPQNPSTYSL NIQNNNNNIP VETNSVLNKG
501: NEKDDVGRRW PKDEVLALIN LRCTSVNNNN NEEKEGNNKV PLWERISQGM LELGYKRSAK RCKEKWENIN KYFRKTKDVN KKRSLDSRTC PYFHQLSSLY
601: NQGKPVLQSE SHLNSPPNQN PEQVTPDQTT QAHESSSQVG SGGGFSVQQQ QVDHGGEKTL MQVPSLDFDQ F

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.