Factsheet for Bra020607.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05590	Canola	nucleus	95.56	97.16
Bra009994.1-P	Field mustard	nucleus	79.61	79.34
AT5G28300.1	Thale cress	nucleus	78.95	77.54
KRH34074	Soybean	nucleus	37.83	39.59
VIT_14s0030g01860.t01	Wine grape	plastid	39.14	38.7
KRG96954	Soybean	nucleus	37.17	37.67
KRH68714	Soybean	nucleus	37.83	36.92
KRG92655	Soybean	nucleus	38.49	34.87
Bra003702.1-P	Field mustard	nucleus	20.56	27.29
Bra008286.1-P	Field mustard	nucleus	21.55	25.34
Bra015716.1-P	Field mustard	nucleus	22.2	24.5
Bra015715.1-P	Field mustard	nucleus	23.03	24.39
Bra008285.1-P	Field mustard	nucleus	21.38	23.42
Bra022149.1-P	Field mustard	nucleus	14.64	23.0
Bra040010.1-P	Field mustard	nucleus	23.52	22.99
Bra036731.1-P	Field mustard	nucleus	23.68	22.86
Bra003703.1-P	Field mustard	nucleus	22.2	22.02
Bra024925.1-P	Field mustard	nucleus	11.84	22.02
Os02t0104500-01	Rice	nucleus	17.11	21.67
GSMUA_Achr7P04610_001	Banana	nucleus	16.61	20.87
PGSC0003DMT400080676	Potato	nucleus	15.62	20.39
GSMUA_AchrUn_...	Banana	nucleus	6.74	19.16
GSMUA_Achr1P24120_001	Banana	nucleus	20.72	18.83
Zm00001d014938_P001	Maize	nucleus	20.56	18.83
Bra009518.1-P	Field mustard	nucleus	17.6	18.74
Bra005777.1-P	Field mustard	nucleus	17.27	18.32
Bra028824.1-P	Field mustard	nucleus	17.6	18.14
Solyc08g061910.2.1	Tomato	nucleus	7.07	17.2
Zm00001d054080_P001	Maize	nucleus	19.9	16.95
EES06104	Sorghum	nucleus	20.56	16.89
HORVU0Hr1G014900.1	Barley	nucleus	19.57	16.83
TraesCS6B01G020100.1	Wheat	nucleus	21.05	16.82
TraesCS6A01G013200.2	Wheat	nucleus	20.72	16.73
TraesCS6D01G016300.1	Wheat	nucleus	20.72	16.64
GSMUA_AchrUn_...	Banana	nucleus	11.51	14.93
GSMUA_AchrUn_...	Banana	nucleus	14.47	12.61

Protein Annotations

EnsemblPlants:Bra020607.1	EnsemblPlants:Bra020607.1-P	EnsemblPlantsGene:Bra020607	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	SEG:seg
UniParc:UPI00025468D6	UniProt:M4DVR3	MapMan:15.5.20	:	:	:

Description

AT5G28300 (E=8e-188) | trihelix DNA-binding protein, putative

Coordinates

chrA02:+:24241543..24243843

Molecular Weight (calculated)

69357.9 Da

IEP (calculated)

7.388

GRAVY (calculated)

-1.033

Length

608 amino acids

Sequence
(BLAST)

001: MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNHQAQ HMLSLDSGKI IHHQHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE
101: VLALLRFRST VENWFPEFTW ELTSRKLAEV GFKRSPQECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF YHHGHNDDQH VSSEVGDNQN
201: KRNNSLEGKE NVEEMGHNLL EEGKIDHQGQ SQVEESSMGN KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKKER FGVLKGFCEG LVRNMIVQQE
301: EMHRKLLEDM VKKEEEKMAR EEAWKTQEME RLNKEVEIRA NEQAMASDRN TSIIKFICKF TGHDNHDDGN GTVQSPSPSQ DSSSLVLPKT QGRRKCQTSS
401: SLLPQALTPH NPISLQTNDI PLEPISTETL KTKTQNRKPP LSDEKSDTGK RWPRDEVLAL INIRRSISSI NDDDHHKGGI SLSSSSSRAV PLWERISKKM
501: VESGYKRRAK RCKEKWENIN KYFKKTKDVN KKRPLDSRTC PYFHQLTALY SQPSTGTTTT ATDTSTGELE TRVGSGDPDD IPAVMHVDAN GAGEKSNVQF
601: SGFDLALP

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.