CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054080_P001	Maize	nucleus	88.11	91.32
Os02t0104500-01	Rice	nucleus	49.32	76.04
TraesCS6B01G020100.1	Wheat	nucleus	74.32	72.27
TraesCS6D01G016300.1	Wheat	nucleus	73.78	72.13
TraesCS6A01G013200.2	Wheat	nucleus	73.38	72.11
HORVU0Hr1G014900.1	Barley	nucleus	67.03	70.16
GSMUA_Achr7P04610_001	Banana	nucleus	31.22	47.73
GSMUA_AchrUn_...	Banana	nucleus	29.86	47.12
GSMUA_Achr1P24120_001	Banana	nucleus	39.32	43.5
VIT_04s0008g01850.t01	Wine grape	nucleus	33.78	38.76
GSMUA_AchrUn_...	Banana	nucleus	8.51	29.44
PGSC0003DMT400080676	Potato	nucleus	16.22	25.75
KRH34074	Soybean	nucleus	17.7	22.55
KRG96954	Soybean	nucleus	17.84	22.0
KXG40355	Sorghum	nucleus, plastid	23.11	21.89
KRH68714	Soybean	nucleus	18.24	21.67
OQU82045	Sorghum	nucleus, plastid	21.76	21.55
CDY52482	Canola	nucleus	17.43	21.29
Bra009994.1-P	Field mustard	nucleus	17.43	21.15
CDX86194	Canola	nucleus	17.43	21.15
CDY52502	Canola	nucleus	17.03	21.11
EER91374	Sorghum	nucleus	22.84	20.94
CDY05590	Canola	nucleus	16.62	20.57
Bra020607.1-P	Field mustard	nucleus	16.89	20.56
AT5G28300.1	Thale cress	nucleus	17.16	20.52
EES05815	Sorghum	nucleus	19.59	20.14
KRG92655	Soybean	nucleus	17.7	19.52
Solyc08g061910.2.1	Tomato	nucleus	6.49	19.2
GSMUA_AchrUn_...	Banana	nucleus	17.3	18.34

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EntrezGene:8085164	UniProt:C5XRJ0	EnsemblPlants:EES06104	ProteinID:EES06104
ProteinID:EES06104.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR017877	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF31	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3004G003700	UniParc:UPI0001A85DA2	RefSeq:XP_002453128.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:330856..333682

Molecular Weight (calculated)

78470.8 Da

IEP (calculated)

6.319

GRAVY (calculated)

-0.846

Length

740 amino acids

Sequence
(BLAST)

001: MQSGYGGVSE FQQFIMDGGF AMSAPPPQQQ PPQPAAASAQ ELGGPFRYQP LHHHALPPQH HHHAPHMPPH FAHFGAAPPP PFTQQLLHQA AAAGHHHLQL
101: FHEQQQQHHH HHKPQPPPPH PQHHQLPARW APQPQQQQHH HQQQQPQAQT HHHHHHHLGF DVEAAVPESS GAAGAAASGG AAPPGVPPFL AAAMNFKLAV
201: DAGGGSGATG GTDDALNDGG GAAGSGMMLH VGGGGGGDDE AATESRLRRW AGDEETSIKE PTWRPLDIDY LHSSSSSKRT GKEKVATPES PAPVAAANYF
301: KKGDDNAAAA AAAAAAGGGN YKLFSELEAI YKPGSGGAGV AQTGSGSGLT GDDNAILEPA MADLPDVAAA AAGPQLNTSE TSAGEEAAAV VQPQPQLQPS
401: TDAARRKRKR RRQQQQEQLS ASASFFERLV QRLMEHQESL HRQFLEAMER RERERAARDE AWRRQEADKF AREAGARAQD RASAAAREAA IIAYLEKISG
501: ESITLPPPAA ASGDDTSQDA TAAGNGKELV PYDGGDATAH DGGGAGGSLH LSTSRWPKHE VEALIRVRTG LEGRFQEPGL KGPLWEEVSA RMAAAGYGRS
601: AKRCKEKWEN INKYFRKAKE SGKKRPAHAK TCPYFDELDR LYSRSGHSAA AARDGEANAG GGEAKQASSE LLDAVVKYPD VRYGPPGFGM DREQVSGGNN
701: NANNEGGEDD GDGEEDGIGK GRAGDDQDDD EVDSHGHDDE

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.