CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009994.1-P	Field mustard	nucleus	99.84	99.84
CDY52482	Canola	nucleus	96.07	96.7
CDY05590	Canola	nucleus	78.69	80.27
CDY52502	Canola	nucleus	77.7	79.4
AT5G28300.1	Thale cress	nucleus	80.33	79.16
KRH34074	Soybean	nucleus	38.85	40.79
VIT_14s0030g01860.t01	Wine grape	plastid	39.84	39.51
KRG96954	Soybean	nucleus	36.89	37.5
KRH68714	Soybean	nucleus	37.54	36.76
KRG92655	Soybean	nucleus	39.34	35.77
CDY45957	Canola	nucleus	20.49	25.61
CDY62151	Canola	nucleus	22.62	25.32
CDY13568	Canola	nucleus	20.33	25.15
CDY44964	Canola	nucleus	15.74	24.94
CDY45955	Canola	nucleus	17.7	24.55
CDY48546	Canola	nucleus	16.39	23.81
CDX88320	Canola	nucleus	21.15	23.71
CDY71745	Canola	nucleus	22.13	23.6
CDY65284	Canola	nucleus	21.31	23.47
CDX93785	Canola	nucleus	22.62	23.43
CDX85981	Canola	nucleus	13.93	23.29
CDX68080	Canola	nucleus	21.48	22.63
CDY40550	Canola	nucleus	14.43	22.51
CDY28914	Canola	nucleus	14.1	22.22
GSMUA_Achr7P04610_001	Banana	nucleus	17.21	21.69
Os02t0104500-01	Rice	nucleus	17.05	21.67
CDY48545	Canola	nucleus, plastid	20.16	21.65
PGSC0003DMT400080676	Potato	nucleus	16.23	21.24
GSMUA_AchrUn_...	Banana	nucleus	7.38	21.03
CDY17716	Canola	nucleus	11.64	20.46
CDX85980	Canola	nucleus	7.05	20.28
Zm00001d014938_P001	Maize	nucleus	20.66	18.98
GSMUA_Achr1P24120_001	Banana	nucleus	20.66	18.83
CDX87564	Canola	nucleus	13.11	18.74
CDX70293	Canola	nucleus	16.72	17.86
EES06104	Sorghum	nucleus	21.15	17.43
Zm00001d054080_P001	Maize	nucleus	20.16	17.23
CDY44379	Canola	nucleus	16.56	17.15
HORVU0Hr1G014900.1	Barley	nucleus	19.84	17.11
TraesCS6B01G020100.1	Wheat	nucleus	21.31	17.08
TraesCS6A01G013200.2	Wheat	nucleus	20.98	17.0
TraesCS6D01G016300.1	Wheat	nucleus	20.98	16.91
CDX80883	Canola	nucleus	14.1	16.86
CDY11266	Canola	nucleus	13.77	16.47
CDY04893	Canola	nucleus	13.28	15.98
CDY10364	Canola	nucleus	13.28	15.98
Solyc08g061910.2.1	Tomato	nucleus	6.39	15.6
CDX77787	Canola	nucleus	15.41	14.64
GSMUA_AchrUn_...	Banana	nucleus	10.66	13.86
GSMUA_AchrUn_...	Banana	nucleus	14.75	12.89
CDX87563	Canola	nucleus	0.98	8.7
CDY45956	Canola	cytosol	0.82	7.04

Protein Annotations

EnsemblPlants:CDX86194	EnsemblPlantsGene:GSBRNA2T00144271001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX86194	ProteinID:CDX86194.1
SEG:seg	UniParc:UPI0004EEAEE5	MapMan:15.5.20	:	:	:

Description

BnaA06g29110D

Coordinates

chrLK031845:-:278858..281162

Molecular Weight (calculated)

69886.3 Da

IEP (calculated)

7.468

GRAVY (calculated)

-1.109

Length

610 amino acids

Sequence
(BLAST)

001: MFDGGVPEQI HRFIASPQPP PPLPPHQPAA ERSLPFPVSF ASFNTNHQAH MLNLDGPKIT HHHHHHHHHH HDIKDSSATS EWMGHTDHDG DNHRHHHHHP
101: WCSDEVLALL RFRSTVENWF PEFTWEHTSR KLAEVGFKRS PQECKEKFEE EERRYFNSNN NTNAHHMSNY NKGNYRLFSE VDEFYHHGHA GGEHVVSSEV
201: GDNQNKTNSS LEGKGNVEET GQDLLEDKTD HQDQGQVDES SMRDKMNSID TVGKVGNVED DAKSSSSASL MMIMRDNKKR KRKKKKERFG VLKGFCEGLV
301: SNVIAQQEEM HKKLLEDMVK KEEEKIAREE VWKKQEMERL NKELEIRAQE QAMASDRNTS IIKFISKFTD HYNHDDGNNK VQSPNPSQDS FSLVLSKPQG
401: SRKCQTSSSL QTLTPQNPSL EPTSPKTLKI KTKNPKAPKG DEQGDIGKRW PRDEVLALIN IRRSISSMND DDHRKDDIRL SSPSSSTKAV PLWERISKKM
501: LEVGYKRSAK RCKEKWENIN KYFRKTKDVN KKRPLDSRTC PYFHQLTALY SQPSTGTTTT VTADTSVEEL ETRPKENRVG SGDSDIPTAM HVDGASEKSN
601: EQFSGFDLAF

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.