CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020607.1-P	Field mustard	nucleus	97.16	95.56
CDY52502	Canola	nucleus	94.31	94.47
CDY52482	Canola	nucleus	79.93	78.88
CDX86194	Canola	nucleus	80.27	78.69
AT5G28300.1	Thale cress	nucleus	79.77	77.06
KRH34074	Soybean	nucleus	38.8	39.93
VIT_14s0030g01860.t01	Wine grape	plastid	39.63	38.54
KRG96954	Soybean	nucleus	37.79	37.67
KRH68714	Soybean	nucleus	38.46	36.92
KRG92655	Soybean	nucleus	39.63	35.32
CDY45957	Canola	nucleus	22.41	27.46
CDY13568	Canola	nucleus	22.07	26.77
CDY62151	Canola	nucleus	23.75	26.05
CDY48546	Canola	nucleus	18.06	25.71
CDY44964	Canola	nucleus	16.22	25.19
CDY45955	Canola	nucleus	18.23	24.77
CDX85981	Canola	nucleus	15.05	24.66
CDY71745	Canola	nucleus	23.24	24.3
CDX93785	Canola	nucleus	23.41	23.77
CDX88320	Canola	nucleus	21.57	23.71
CDY65284	Canola	nucleus	21.57	23.29
CDY40550	Canola	nucleus	15.05	23.02
CDX68080	Canola	nucleus	22.07	22.8
CDY28914	Canola	nucleus	14.72	22.74
CDY48545	Canola	nucleus, plastid	20.9	22.01
Os02t0104500-01	Rice	nucleus	17.06	21.25
GSMUA_Achr7P04610_001	Banana	nucleus	16.72	20.66
CDY17716	Canola	nucleus	11.71	20.17
PGSC0003DMT400080676	Potato	nucleus	15.72	20.17
CDX85980	Canola	nucleus	7.02	19.81
CDX70293	Canola	nucleus	18.56	19.44
CDX87564	Canola	nucleus	13.38	18.74
GSMUA_AchrUn_...	Banana	nucleus	6.69	18.69
GSMUA_Achr1P24120_001	Banana	nucleus	20.9	18.68
Zm00001d014938_P001	Maize	nucleus	20.4	18.37
CDY44379	Canola	nucleus	18.06	18.34
CDY11266	Canola	nucleus	15.05	17.65
CDY10364	Canola	nucleus	14.88	17.55
CDX80883	Canola	nucleus	14.72	17.25
Zm00001d054080_P001	Maize	nucleus	20.07	16.81
EES06104	Sorghum	nucleus	20.57	16.62
TraesCS6A01G013200.2	Wheat	nucleus	20.9	16.6
TraesCS6B01G020100.1	Wheat	nucleus	21.07	16.56
HORVU0Hr1G014900.1	Barley	nucleus	19.57	16.55
TraesCS6D01G016300.1	Wheat	nucleus	20.9	16.51
Solyc08g061910.2.1	Tomato	nucleus	6.86	16.4
CDY04893	Canola	nucleus	13.88	16.37
GSMUA_AchrUn_...	Banana	nucleus	11.87	15.14
CDX77787	Canola	nucleus	15.72	14.64
GSMUA_AchrUn_...	Banana	nucleus	14.72	12.61
CDX87563	Canola	nucleus	0.5	4.35
CDY45956	Canola	cytosol	0.33	2.82

Protein Annotations

EnsemblPlants:CDY05590	EnsemblPlantsGene:GSBRNA2T00120548001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY05590	ProteinID:CDY05590.1
SEG:seg	UniParc:UPI0004EF0DB0	MapMan:15.5.20	:	:	:

Description

BnaC02g39470D

Coordinates

chrLK031963:-:26531..28796

Molecular Weight (calculated)

68541.2 Da

IEP (calculated)

8.483

GRAVY (calculated)

-1.063

Length

598 amino acids

Sequence
(BLAST)

001: MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNHQAQ HMLSLDSRKI IHHHHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE
101: VLALLRFRST VENWFPEFTW ELTSRKLAEV GYKRSPRECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF YHHGHNDDEH VSSEVGDNQN
201: KRNNSLKGKE NVEEMGHNLL EEGKRDHQGQ GQVEESSMGN KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKERF GVLKGFCEGL VRNMIVQQEE
301: MHKKLLEDMV KKEEEKMARE EAWKKQEMER LNKEVEIRAN EQAMASDRNT SIIKFICKFT GHDNHDDGNG MVQSPRPSQD SSSLVLPKTQ GRRKCQTSSS
401: LLPQALTPHN PISLQTNDIP LEPISTETLK TKTQNRKPPL SDEKSDTGKR WPRDEVLALI NIRRSISSIN DDDHHKGGIS LSSSSSKAVP LWERISKKML
501: ESGYKRSAKR CKEKWENINK YFKKTKNVNK KRPLDSRTCP YFHQLTALYS QPTTTATDTS TGELETRVGS GDSVMHVDAN GAGEKSNVQF SGFDLALP

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.