CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003703.1-P	Field mustard	nucleus	99.31	93.8
CDY48545	Canola	nucleus, plastid	89.12	90.85
CDX88320	Canola	nucleus	76.68	81.62
CDY45956	Canola	cytosol	9.84	80.28
CDY65284	Canola	nucleus	76.34	79.78
CDY45955	Canola	nucleus	60.45	79.55
AT1G76880.1	Thale cress	nucleus	81.52	78.28
CDX87563	Canola	nucleus	9.15	76.81
CDX87564	Canola	nucleus	48.36	65.57
KRH70308	Soybean	nucleus	52.68	48.34
CDY13568	Canola	nucleus	41.11	48.28
CDY45957	Canola	nucleus	40.41	47.95
KRH08699	Soybean	nucleus	52.68	46.56
KRG91649	Soybean	nucleus	51.64	46.43
KRH35149	Soybean	nucleus	51.99	45.13
CDY48546	Canola	nucleus	31.78	43.81
CDY62151	Canola	nucleus	36.96	39.27
CDY71745	Canola	nucleus	36.79	37.24
CDX93785	Canola	nucleus	37.82	37.18
CDX85981	Canola	nucleus	22.97	36.44
CDY44964	Canola	nucleus	23.49	35.32
CDX85980	Canola	nucleus	11.57	31.6
Zm00001d032453_P001	Maize	nucleus	41.45	30.61
Zm00001d013849_P001	Maize	nucleus	40.93	30.5
EER91374	Sorghum	nucleus	41.62	29.86
TraesCS4B01G396900.1	Wheat	nucleus	34.89	29.19
TraesCSU01G029700.1	Wheat	nucleus	39.55	29.1
TraesCS1B01G203300.2	Wheat	nucleus	40.76	28.99
HORVU1Hr1G046940.4	Barley	nucleus	41.45	28.99
TraesCS5A01G558200.1	Wheat	nucleus, plastid	39.21	28.92
TraesCS1D01G162400.1	Wheat	nucleus, plastid	40.76	28.89
TraesCS1A01G176700.2	Wheat	nucleus	40.76	28.89
HORVU4Hr1G089120.1	Barley	nucleus, plastid	39.55	28.88
KXG40355	Sorghum	nucleus, plastid	38.69	28.68
GSMUA_Achr8P11770_001	Banana	nucleus	8.46	28.66
Zm00001d027335_P001	Maize	nucleus	37.48	26.82
CDY28914	Canola	nucleus	16.41	24.55
CDY40550	Canola	nucleus	16.41	24.3
CDX70293	Canola	nucleus	23.66	23.99
CDY44379	Canola	nucleus	23.83	23.43
CDX80883	Canola	nucleus	20.38	23.14
CDY11266	Canola	nucleus	20.21	22.94
CDY10364	Canola	nucleus	19.86	22.68
CDY52502	Canola	nucleus	23.14	22.45
CDY17716	Canola	nucleus	13.3	22.19
CDY05590	Canola	nucleus	22.8	22.07
CDY04893	Canola	nucleus	19.17	21.89
CDX86194	Canola	nucleus	22.63	21.48
CDY52482	Canola	nucleus	22.45	21.45
CDX77787	Canola	nucleus	19.17	17.29

Protein Annotations

EnsemblPlants:CDX68080	EnsemblPlantsGene:GSBRNA2T00099318001	Gene3D:1.10.10.60	GO:A0A078BTZ2	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX68080
ProteinID:CDX68080.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EF4797	MapMan:15.5.20	:

Description

BnaA07g21200D

Coordinates

chrLK031787:-:3751362..3754255

Molecular Weight (calculated)

65545.2 Da

IEP (calculated)

6.813

GRAVY (calculated)

-1.134

Length

579 amino acids

Sequence
(BLAST)

001: MMQLGGTTTT AVTSATPPPS NDSAATEAAA AAATVGAFEV SEEMNDRGFG GNRWPRQETL ALLKIRSDMG IAFRDSSVKG PLWEEVSRKM AELGYIRNAK
101: KCKEKFENVY KYHKRTKEGR TGKSEGKTYR FFDQLEALET RPTSSSLHHQ QQPQPPPQTQ PQPLQPQPPL RPHNNNSSMF STPPPPVNVP LFPNISGDFL
201: SDDSTSSSHS TSSDVEVGDG TTTTRKKKRK RKWKEFFERL TRQVVDKQEE LQRKFLEAVE KREHERLVRE ESWRVQEIAR INRERDILAQ ERSMSAAKDA
301: AVMAFLQKLS EKPNPQGQSI PQQQPQPQQP PSQMQVNNNN NQQTPQPPPP PISQPTQPVT PTVDTSKTDN ALSSSRWPKV EIEALIKLRT NLDSKYQENG
401: PKGPLWEEIS AGMKRLGFNR NSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRERNKFH TSNNVIASSS STSGLVKPDN SVPLMVQPEQ
501: QWPPAMATTT MTSTVAATAQ PDQHPPPQPL DKNFDDEEGT DGEEYDEEED YEENEEEEGG EFELVPSNNN NNNKPTNNM

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.