Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • mitochondrion 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G350500.1 nucleus
TraesCS1B01G364800.1 nucleus
TraesCS1D01G353300.1 nucleus
TraesCS3A01G282800.1 nucleus
TraesCS3B01G316500.1 nucleus
TraesCS3D01G282800.1 nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03680.1 TraesCS1A01G350500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1B01G364800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1D01G353300.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3A01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3B01G316500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3D01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1A01G350500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1B01G364800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1D01G353300.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3A01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3B01G316500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3D01G282800.1 AT3G01090.2 25697797
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G176700.2 Wheat nucleus 97.05 96.7
TraesCS1D01G162400.1 Wheat nucleus, plastid 96.19 95.84
HORVU1Hr1G046940.4 Barley nucleus 92.87 91.3
Zm00001d032453_P001 Maize nucleus 66.09 68.62
Zm00001d013849_P001 Maize nucleus 63.15 66.15
EER91374 Sorghum nucleus 65.11 65.68
GSMUA_Achr8P11760_001 Banana endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 36.36 53.14
GSMUA_Achr11P... Banana nucleus 41.4 52.74
GSMUA_Achr4P24780_001 Banana nucleus 40.42 49.18
GSMUA_Achr9P18800_001 Banana nucleus 34.77 49.05
GSMUA_Achr1P04100_001 Banana nucleus 38.33 48.67
GSMUA_Achr2P11910_001 Banana nucleus 37.22 47.34
TraesCS4B01G396900.1 Wheat nucleus 40.17 47.25
GSMUA_Achr5P19950_001 Banana nucleus, plastid 38.21 47.12
CDY45955 Canola nucleus 24.82 45.91
GSMUA_Achr4P29130_001 Banana nucleus 38.94 45.35
KRH35148 Soybean cytosol, mitochondrion, nucleus 10.93 45.18
CDX88320 Canola nucleus 29.73 44.49
Bra015716.1-P Field mustard nucleus 30.1 44.46
CDY13568 Canola nucleus 26.78 44.22
VIT_04s0044g00510.t01 Wine grape nucleus 27.64 44.12
TraesCS2B01G407400.1 Wheat nucleus 41.15 44.08
CDY45957 Canola nucleus 26.41 44.06
Bra003702.1-P Field mustard nucleus 24.2 43.01
CDY65284 Canola nucleus 29.12 42.78
Bra008285.1-P Field mustard nucleus 28.87 42.34
Bra008286.1-P Field mustard nucleus 26.78 42.17
KRG91649 Soybean nucleus 32.92 41.61
AT1G76880.1 Thale cress nucleus 30.59 41.29
CDY48545 Canola nucleus, plastid 28.62 41.02
CDX68080 Canola nucleus 28.99 40.76
KRH35149 Soybean nucleus 33.29 40.63
Bra015715.1-P Field mustard nucleus 28.5 40.42
KRH70308 Soybean nucleus 31.2 40.25
AT1G76890.2 Thale cress nucleus 28.26 40.0
CDY48546 Canola nucleus 20.64 40.0
KRH08699 Soybean nucleus 32.06 39.85
TraesCS6B01G284400.3 Wheat nucleus, plastid 31.82 39.85
Solyc11g005380.1.1 Tomato nucleus 24.08 39.6
VIT_18s0072g00670.t01 Wine grape nucleus 31.2 39.32
GSMUA_Achr2P00580_001 Banana nucleus 33.66 39.09
Bra003703.1-P Field mustard nucleus 29.36 38.99
PGSC0003DMT400010112 Potato nucleus 23.83 38.57
PGSC0003DMT400061942 Potato nucleus 29.73 38.53
KRH53849 Soybean nucleus 23.34 38.23
Solyc12g056510.1.1 Tomato nucleus 30.1 37.63
Solyc04g071360.2.1 Tomato nucleus 30.1 37.46
KRH38181 Soybean nucleus 22.48 37.35
KRH64101 Soybean nucleus 22.48 36.6
CDX87564 Canola nucleus 19.16 36.53
KRG91651 Soybean nucleus 27.64 35.71
KRH70307 Soybean nucleus 25.8 35.06
KRH08698 Soybean nucleus 25.92 34.25
KRH35147 Soybean nucleus 10.81 30.88
VIT_13s0074g00400.t01 Wine grape nucleus 20.52 29.77
VIT_08s0007g03820.t01 Wine grape nucleus 19.9 28.98
KRG96146 Soybean nucleus 20.52 28.89
KRH67857 Soybean nucleus 20.02 28.01
PGSC0003DMT400007016 Potato nucleus 18.55 27.86
CDX70293 Canola nucleus 19.53 27.85
Bra005777.1-P Field mustard nucleus 19.53 27.75
Bra009518.1-P Field mustard nucleus 19.41 27.67
Solyc09g009250.2.1 Tomato nucleus 18.43 27.62
CDX80883 Canola nucleus 17.2 27.45
AT5G03680.1 Thale cress nucleus 19.9 27.41
CDY11266 Canola nucleus 17.08 27.25
CDY44379 Canola nucleus 19.53 26.99
PGSC0003DMT400072404 Potato nucleus 13.76 26.99
Bra028824.1-P Field mustard nucleus 19.53 26.95
CDY10364 Canola nucleus 16.46 26.43
CDY04893 Canola nucleus 15.97 25.64
KRH32666 Soybean nucleus 18.67 25.59
AT3G10000.1 Thale cress nucleus 14.62 24.74
KRH34733 Soybean nucleus 16.09 24.17
KRG92051 Soybean nucleus 15.6 23.65
TraesCS6B01G020100.1 Wheat nucleus 21.5 23.0
CDY45956 Canola cytosol 1.11 12.68
Protein Annotations
EnsemblPlants:TraesCS1B01G203300.2EnsemblPlantsGene:TraesCS1B01G203300Gene3D:1.10.10.60InterPro:IPR017877InterPro:Myb-like_domInterPro:SANT/Myb
PANTHER:PTHR21654PANTHER:PTHR21654:SF48PFAM:PF13837PFscan:PS50090SEG:segSMART:SM00717
TIGR:cd12203MapMan:15.5.20::::
Description
No Description!
Coordinates
chr1B:+:365019305..365022567
Molecular Weight (calculated)
86730.8 Da
IEP (calculated)
6.582
GRAVY (calculated)
-0.856
Length
814 amino acids
Sequence
(BLAST)
001: MQQQQQPQHQ GGGRGQQFGL HTPEMPPFSP SRTTGQQRIS MAEAPSPISS RPPAPGPPPP QQQQLNNELA GAGAVAFDEE ALAAGEEGLG GGAGGNRWPR
101: QETLALLKIR SDMDAAFRDA TLKGPLWEEV SRKLAEEGYR RNAKKCKEKF ENVHKYYKRT KDSRAGRNDG KTYRFFRQLE AMQSTAAPTA SAPPPATAVG
201: VPGVVVPTAV RPLAEPPPVG AAAAATAGLP TPVVVGNLSF STSNTEEYSD EDDSDNEGTD DMGGGADERG KRKRTSEGGA AAGSGGDAGS GKMMRFFEGL
301: MKQVMERQEA MQQRFLEAIE KREQDRMIRE EAWRRQEMAR LAREQEILGQ ERAMAATRDA AVLSFIQKIT GQTIPMPSIA AQAITFMPPP PPSQPHATPI
401: AYSAAPVPAR PSSSQPPATH SPPQPQPSPR QQKPPTMPPV TPQPHKSPAP ATPQLQQQAP VVNSSCMDIV VAPPSEAPHD SSGYDGSGGG SGPASSRWPK
501: TEVHALIQLR SNLDMRYQEA GPKGPLWEEI SAGMRRMGYN RSSKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL EALYRNKAAL GSPSGGGGAL
601: ALPPPAEHAN AAPQERIEAF TVAAPISQTA PQQPPVAKND ASNAGNGNGN GGGVSAGVSG GVQRLAASNG GSRFVFSEAG GDAAAKKPEG IMKETTMEQR
701: QPQPQPQAAQ QAAINSYNRT GGGGAESDNM DEDDEDEDDS EDEDEEDDLD GNKTQYKIQF QGQQQHQNQH QQHHHNVVRP NATSSGGGNP PGAAAPSAPA
801: AATTTAGSFL GMVQ
Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.