Factsheet for Bra015716.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88320	Canola	nucleus	93.28	94.49
Bra008285.1-P	Field mustard	nucleus	79.13	78.56
Bra003703.1-P	Field mustard	nucleus	83.67	75.2
AT1G76880.1	Thale cress	nucleus	82.21	75.12
KRH70308	Soybean	nucleus	56.26	49.13
KRH08699	Soybean	nucleus	55.54	46.72
Bra003702.1-P	Field mustard	nucleus	38.11	45.85
KRG91649	Soybean	nucleus	53.54	45.81
Bra008286.1-P	Field mustard	nucleus	42.83	45.65
KRH35149	Soybean	nucleus	54.08	44.68
Bra015715.1-P	Field mustard	nucleus	45.37	43.55
Bra040010.1-P	Field mustard	nucleus	40.11	35.53
Bra036731.1-P	Field mustard	nucleus	40.29	35.24
Zm00001d013849_P001	Maize	nucleus	44.46	31.53
Zm00001d032453_P001	Maize	nucleus	44.1	30.99
EER91374	Sorghum	nucleus	44.83	30.61
GSMUA_Achr8P11770_001	Banana	nucleus	9.44	30.41
TraesCS1D01G162400.1	Wheat	nucleus, plastid	45.01	30.36
TraesCS1A01G176700.2	Wheat	nucleus	45.01	30.36
TraesCS1B01G203300.2	Wheat	nucleus	44.46	30.1
HORVU1Hr1G046940.4	Barley	nucleus	44.83	29.83
TraesCSU01G029700.1	Wheat	nucleus	41.92	29.35
TraesCS4B01G396900.1	Wheat	nucleus	36.66	29.19
TraesCS5A01G558200.1	Wheat	nucleus, plastid	41.02	28.79
HORVU4Hr1G089120.1	Barley	nucleus, plastid	41.38	28.75
KXG40355	Sorghum	nucleus, plastid	39.56	27.91
Zm00001d027335_P001	Maize	nucleus	38.84	26.45
Bra022149.1-P	Field mustard	nucleus	17.42	24.81
Bra005777.1-P	Field mustard	nucleus	25.41	24.43
Bra028824.1-P	Field mustard	nucleus	25.59	23.9
Bra009518.1-P	Field mustard	nucleus	24.5	23.64
Bra024925.1-P	Field mustard	nucleus	13.79	23.24
Bra020607.1-P	Field mustard	nucleus	24.5	22.2
Bra009994.1-P	Field mustard	nucleus	24.14	21.8

Protein Annotations

EnsemblPlants:Bra015716.1	EnsemblPlants:Bra015716.1-P	EnsemblPlantsGene:Bra015716	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090
SEG:seg	SMART:SM00717	UniParc:UPI0002541A28	UniProt:M4DGU0	MapMan:15.5.20	:

Description

AT1G76880 (E=5e-072) | trihelix DNA-binding protein, putative

Coordinates

chrA07:+:21201721..21203839

Molecular Weight (calculated)

62221.8 Da

IEP (calculated)

5.676

GRAVY (calculated)

-1.167

Length

551 amino acids

Sequence
(BLAST)

001: MEFGGGTTTT TSAPAEAPPP PQSNDAAAAT EAAAAAATVG AFEVSEEMND RGGFGGNRWP RQETVALLKI RSDMGIAFRD ASAKGPLWEE VSRKMGELGY
101: IRNAKKCKEK FENVYKYHKR TKEGRTGKSE GKTYRFFDQL EALETHHQPQ TQPPPLRPHN NNSSMFSTPP PVTTTIIPPT TTPSFPNISG DFMSDNSTSS
201: SSSYSTSSDV DIGGGGRNKK KRKRKWKEFF ERLMKQVVDK QEELQRQFLE AVEKRERERM AREESWRAQE IARINREREI LAQERSMSAA KDAAVMAFLQ
301: KFSEKPNPQG QPQPQPQPQV NNNNNQQTSQ TPQPPPPPLP QPTLDTAKTD NGDQIMTTPA SASSSRWPKV EIEALIKLRT NLDSKYLENG PKGPLWEEIS
401: AGMRRLGFNR NSKRCKEKWE NINKYFKKVK ESNKKRPQDS KTCPYFHQLD ALYRERNKFQ TTTTNNNVAS SSSTKPDNSV PLMVQPEQQW PPAATVSQAD
501: HHPAQPLDQN YDDEEGTDEE DYDDEEEDEE NEEEEGEFEL VPSNDNKTNN V

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.