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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 3
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G350500.1 nucleus
TraesCS1B01G364800.1 nucleus
TraesCS1D01G353300.1 nucleus
TraesCS3A01G282800.1 nucleus
TraesCS3B01G316500.1 nucleus
TraesCS3D01G282800.1 nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G03680.1 TraesCS1A01G350500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1B01G364800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1D01G353300.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3A01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3B01G316500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3D01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1A01G350500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1B01G364800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS1D01G353300.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3A01G282800.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3B01G316500.1 AT3G01090.2 25697797
AT5G03680.1 TraesCS3D01G282800.1 AT3G01090.2 25697797
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G176700.2 Wheat nucleus 97.31 97.31
TraesCS1B01G203300.2 Wheat nucleus 95.84 96.19
HORVU1Hr1G046940.4 Barley nucleus 93.02 91.79
Zm00001d032453_P001 Maize nucleus 66.46 69.26
Zm00001d013849_P001 Maize nucleus 63.4 66.67
EER91374 Sorghum nucleus 65.61 66.42
GSMUA_Achr11P... Banana nucleus 41.74 53.36
GSMUA_Achr8P11760_001 Banana endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 35.99 52.78
GSMUA_Achr4P24780_001 Banana nucleus 40.39 49.33
GSMUA_Achr9P18800_001 Banana nucleus 34.76 49.22
GSMUA_Achr1P04100_001 Banana nucleus 38.31 48.83
TraesCS2D01G387100.1 Wheat nucleus 43.33 47.52
GSMUA_Achr2P11910_001 Banana nucleus 37.21 47.5
GSMUA_Achr5P19950_001 Banana nucleus, plastid 38.31 47.42
CDY45955 Canola nucleus 24.97 46.36
GSMUA_Achr4P29130_001 Banana nucleus 39.05 45.64
KRH35148 Soybean cytosol, mitochondrion, nucleus 10.89 45.18
Bra015716.1-P Field mustard nucleus 30.36 45.01
VIT_04s0044g00510.t01 Wine grape nucleus 28.03 44.9
CDX88320 Canola nucleus 29.74 44.67
CDY13568 Canola nucleus 26.93 44.62
CDY45957 Canola nucleus 26.56 44.47
Bra003702.1-P Field mustard nucleus 24.36 43.45
CDY65284 Canola nucleus 29.13 42.96
Bra008285.1-P Field mustard nucleus 29.01 42.7
Bra008286.1-P Field mustard nucleus 26.93 42.55
KRG91649 Soybean nucleus 33.05 41.93
AT1G76880.1 Thale cress nucleus 30.48 41.29
CDY48545 Canola nucleus, plastid 28.52 41.02
KRH35149 Soybean nucleus 33.41 40.93
Bra015715.1-P Field mustard nucleus 28.64 40.77
CDX68080 Canola nucleus 28.89 40.76
KRH70308 Soybean nucleus 31.09 40.25
CDY48546 Canola nucleus 20.69 40.24
AT1G76890.2 Thale cress nucleus 28.27 40.17
KRH08699 Soybean nucleus 32.07 40.0
GSMUA_Achr2P00580_001 Banana nucleus 34.03 39.66
TraesCS6D01G222500.1 Wheat nucleus 32.56 39.64
VIT_18s0072g00670.t01 Wine grape nucleus 31.33 39.63
Solyc11g005380.1.1 Tomato nucleus 23.99 39.6
Bra003703.1-P Field mustard nucleus 29.25 38.99
PGSC0003DMT400061942 Potato nucleus 29.87 38.85
PGSC0003DMT400010112 Potato nucleus 23.87 38.77
KRH53849 Soybean nucleus 23.38 38.43
Solyc12g056510.1.1 Tomato nucleus 30.23 37.94
Solyc04g071360.2.1 Tomato nucleus 30.23 37.77
KRH38181 Soybean nucleus 22.52 37.55
KRH64101 Soybean nucleus 22.52 36.8
CDX87564 Canola nucleus 19.22 36.77
KRG91651 Soybean nucleus 27.78 36.03
KRH70307 Soybean nucleus 25.83 35.23
KRH08698 Soybean nucleus 26.07 34.58
KRH35147 Soybean nucleus 11.14 31.93
VIT_13s0074g00400.t01 Wine grape nucleus 20.81 30.3
VIT_08s0007g03820.t01 Wine grape nucleus 20.44 29.87
KRG96146 Soybean nucleus 20.81 29.41
PGSC0003DMT400007016 Potato nucleus 18.97 28.6
KRH67857 Soybean nucleus 20.32 28.52
Solyc09g009250.2.1 Tomato nucleus 18.85 28.36
CDX70293 Canola nucleus 19.58 28.02
Bra005777.1-P Field mustard nucleus 19.58 27.92
Bra009518.1-P Field mustard nucleus 19.46 27.85
CDY11266 Canola nucleus 17.26 27.65
CDX80883 Canola nucleus 17.26 27.65
AT5G03680.1 Thale cress nucleus 19.95 27.58
CDY44379 Canola nucleus 19.58 27.16
Bra028824.1-P Field mustard nucleus 19.58 27.12
PGSC0003DMT400072404 Potato nucleus 13.71 26.99
CDY10364 Canola nucleus 16.52 26.63
KRH32666 Soybean nucleus 19.09 26.26
CDY04893 Canola nucleus 16.16 26.04
AT3G10000.1 Thale cress nucleus 14.81 25.16
KRH34733 Soybean nucleus 16.4 24.72
KRG92051 Soybean nucleus 15.91 24.21
TraesCS6D01G016300.1 Wheat nucleus 20.56 22.19
CDY45956 Canola cytosol 1.1 12.68
Protein Annotations
EnsemblPlants:TraesCS1D01G162400.1EnsemblPlantsGene:TraesCS1D01G162400Gene3D:1.10.10.60InterPro:IPR017877InterPro:Myb-like_domInterPro:SANT/Myb
PANTHER:PTHR21654PANTHER:PTHR21654:SF48PFAM:PF13837PFscan:PS50090SEG:segSMART:SM00717
TIGR:cd12203MapMan:15.5.20::::
Description
No Description!
Coordinates
chr1D:-:231463981..231467241
Molecular Weight (calculated)
86916.9 Da
IEP (calculated)
6.580
GRAVY (calculated)
-0.863
Length
817 amino acids
Sequence
(BLAST)
001: MQQQQPQHQG GGPGQQFGLH PPEMPPFSPS RSTGQQRISM AEAPSPISSR PPAPGPPPPQ QQQLNNELAG AGAVGCDEEA LAAGEEGLGG GAGGNRWPRQ
101: ETLALLKIRS DMDAAFRDAT LKGPLWEEVS RKLAEEGYRR NAKKCKEKFE NVHKYYKRTK DSRAGRNDGK TYRFFRQLEA MNSTSGATAA PMASAPPPAT
201: AVGVPGAVGP TAVRPLAEPP PVGAAAAATA GLPTPVVVGN LSFSTSNTEE YSDEDDSDDE GTDDMGGGAD ERGKRKRTSE GGAAAGSGGE AGSGKMMRFF
301: EGLMKQVMER QEAMQQRFLE AIEKREQDRM IREEAWRRQE MARLAREQEI LGQERAMAAT RDAAVLSFIQ KITGQTVPMP SIAAQAITFM PPPPPSQPHA
401: TPIAYSAAPV HPRPSSSQPP ATHSPPQPQP SPRQQKPPTM PPVKPQPHKS PALATPQLQQ QAPAVNSSCM DIVVAPSSEA PQDSSGYDGS GGGSGPASSR
501: WPKTEVHALI QLRSNLDMRY QEAGPKGPLW EEISAGMRRM GYNRSSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLEALYRNK AALGSPSGAG
601: GALALPPPAV HANAAPQERI EAFTVAAPIS QTAPQQPPVA KNDASNTGNG NSNGGGASVG ASGGAQRLAA SNGGSRFVFS EAGGDAAAKK PESIMKETTM
701: EQRQPQPQPQ AAQQATINSY NRTGGGGAES DNMDEDDEDE DDYEDEDEED DLDGNKTQYK IQFQGQQQHQ NQHQQHHHNV VRPNATSSGG GNPPGAAAPS
801: APAAATTTAG SFLGMVQ
Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.