Factsheet for Bra008285.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45956	Canola	cytosol	12.61	98.59
CDY45955	Canola	nucleus	78.02	98.41
Bra015716.1-P	Field mustard	nucleus	78.56	79.13
Bra003703.1-P	Field mustard	nucleus	84.5	76.51
AT1G76880.1	Thale cress	nucleus	80.9	74.46
KRH70308	Soybean	nucleus	53.87	47.39
KRH08699	Soybean	nucleus	53.69	45.5
Bra008286.1-P	Field mustard	nucleus	42.34	45.45
Bra003702.1-P	Field mustard	nucleus	37.3	45.2
KRG91649	Soybean	nucleus	51.89	44.72
KRH35149	Soybean	nucleus	52.43	43.63
Bra015715.1-P	Field mustard	nucleus	44.14	42.68
Bra040010.1-P	Field mustard	nucleus	38.92	34.73
Bra036731.1-P	Field mustard	nucleus	38.92	34.29
GSMUA_Achr8P11770_001	Banana	nucleus	9.55	30.99
Zm00001d032453_P001	Maize	nucleus	42.52	30.1
Zm00001d013849_P001	Maize	nucleus	41.98	29.99
EER91374	Sorghum	nucleus	42.7	29.37
TraesCS1D01G162400.1	Wheat	nucleus, plastid	42.7	29.01
TraesCS1A01G176700.2	Wheat	nucleus	42.7	29.01
TraesCS1B01G203300.2	Wheat	nucleus	42.34	28.87
HORVU1Hr1G046940.4	Barley	nucleus	42.88	28.74
TraesCS4B01G396900.1	Wheat	nucleus	35.32	28.32
TraesCSU01G029700.1	Wheat	nucleus	40.0	28.21
KXG40355	Sorghum	nucleus, plastid	39.46	28.04
TraesCS5A01G558200.1	Wheat	nucleus, plastid	38.92	27.52
HORVU4Hr1G089120.1	Barley	nucleus, plastid	39.1	27.36
Zm00001d027335_P001	Maize	nucleus	38.02	26.08
Bra005777.1-P	Field mustard	nucleus	25.23	24.43
Bra022149.1-P	Field mustard	nucleus	16.94	24.29
Bra009518.1-P	Field mustard	nucleus	24.86	24.17
Bra028824.1-P	Field mustard	nucleus	25.41	23.9
Bra024925.1-P	Field mustard	nucleus	13.69	23.24
Bra020607.1-P	Field mustard	nucleus	23.42	21.38
Bra009994.1-P	Field mustard	nucleus	23.42	21.31

Protein Annotations

EnsemblPlants:Bra008285.1	EnsemblPlants:Bra008285.1-P	EnsemblPlantsGene:Bra008285	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090	SEG:seg
SMART:SM00717	UniParc:UPI00025460F7	UniProt:M4CVN8	MapMan:15.5.20	:	:

Description

AT1G76880 (E=7e-170) | trihelix DNA-binding protein, putative

Coordinates

chrA02:+:14356526..14358823

Molecular Weight (calculated)

62992.0 Da

IEP (calculated)

6.349

GRAVY (calculated)

-1.088

Length

555 amino acids

Sequence
(BLAST)

001: MQQGDSTTTS AATEAVPLQH NESAATEAAA ATSAAVGAFE VSEEMSDRGF GGNRWPRQET LALLKIRSDM GIAFRDATVK GPLWEEVSRK MGELGYIRNA
101: KKCKEKFENV YKYHKRTKEG RTEKSEGKTY RFFDQLEALE THSTSSSHHH QPQSQPHNNS SMFSTPPPVT TVIPPTTNIT PSFPNISGDF LSDNSTSSSY
201: STSSDVEVGD TKTTTTRRKK RKRKWKEFFE RLMKQVVGKQ EELQRKFLET VEKREHERMV REESWRVQEI ARINREHEIL AQERSMSAAK DAAVTAFLQK
301: FSEKPNPQCQ SIAQPQMEVI HNNQQATQQQ TPPPRPPQPL SALDTMKTDN GDQNMTPVSA GALSSSRWPK VGIEALIKLR TNLDSKYEEN GPKGPLWEDI
401: SAGMRRLGFN RNSKRCKEKW ENINKYYKKV KESNKKRPED SKTCPYFHQL DALYRERNKF HTNNNVASSS STSGLVKPDN SVPLMVQPEQ QWPPVTATTV
501: GATVKPDQHP PQPLDQNFDD EEGTDQEEYD DEEDDEENQE EEGGEFELVP SNNKD

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.