Factsheet for TraesCS5A01G558200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1	nucleus
TraesCS1B01G364800.1	nucleus
TraesCS1D01G353300.1	nucleus
TraesCS3A01G282800.1	nucleus
TraesCS3B01G316500.1	nucleus
TraesCS3D01G282800.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	TraesCS1A01G350500.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS1B01G364800.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS1D01G353300.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS3A01G282800.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS3B01G316500.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS3D01G282800.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS1A01G350500.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS1B01G364800.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS1D01G353300.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS3A01G282800.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS3B01G316500.1	AT3G01090.2	25697797
AT5G03680.1	TraesCS3D01G282800.1	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G029700.1	Wheat	nucleus	91.47	91.23
TraesCS4B01G396900.1	Wheat	nucleus	80.25	91.04
HORVU4Hr1G089120.1	Barley	nucleus, plastid	88.28	87.39
KXG40355	Sorghum	nucleus, plastid	52.23	52.5
Zm00001d027335_P001	Maize	nucleus	52.74	51.17
GSMUA_Achr8P11760_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	34.65	48.83
TraesCS1A01G176700.2	Wheat	nucleus	49.17	47.25
GSMUA_Achr11P...	Banana	nucleus	37.83	46.48
GSMUA_Achr4P24780_001	Banana	nucleus	38.47	45.14
KRH35148	Soybean	cytosol, mitochondrion, nucleus	11.21	44.67
GSMUA_Achr1P04100_001	Banana	nucleus	36.18	44.31
GSMUA_Achr5P19950_001	Banana	nucleus, plastid	36.56	43.48
GSMUA_Achr9P18800_001	Banana	nucleus	31.72	43.15
GSMUA_Achr2P11910_001	Banana	nucleus	34.52	42.34
TraesCS2A01G389200.1	Wheat	nucleus	39.62	41.58
CDY45955	Canola	nucleus	23.06	41.14
Bra015716.1-P	Field mustard	nucleus	28.79	41.02
CDX88320	Canola	nucleus	28.41	40.99
GSMUA_Achr4P29130_001	Banana	nucleus	35.67	40.06
VIT_04s0044g00510.t01	Wine grape	nucleus	25.99	40.0
CDY45957	Canola	nucleus	24.59	39.55
CDY13568	Canola	nucleus	24.71	39.35
CDX68080	Canola	nucleus	28.92	39.21
Bra008285.1-P	Field mustard	nucleus	27.52	38.92
CDY48545	Canola	nucleus, plastid	28.15	38.91
TraesCS6A01G240200.1	Wheat	nucleus	32.87	38.68
KRG91649	Soybean	nucleus	31.59	38.51
AT1G76880.1	Thale cress	nucleus	29.43	38.31
CDY65284	Canola	nucleus	27.01	38.27
Bra003702.1-P	Field mustard	nucleus	22.29	38.21
KRH70308	Soybean	nucleus	30.7	38.19
Solyc11g005380.1.1	Tomato	nucleus	23.95	37.98
VIT_18s0072g00670.t01	Wine grape	nucleus	31.08	37.77
GSMUA_Achr2P00580_001	Banana	nucleus	33.63	37.66
KRH08699	Soybean	nucleus	31.34	37.56
Bra008286.1-P	Field mustard	nucleus	24.71	37.52
KRH35149	Soybean	nucleus	31.85	37.48
KRH53849	Soybean	nucleus	23.57	37.22
Bra003703.1-P	Field mustard	nucleus	28.92	37.03
PGSC0003DMT400010112	Potato	nucleus	23.69	36.98
KRH38181	Soybean	nucleus	23.06	36.94
PGSC0003DMT400061942	Potato	nucleus	29.43	36.78
KRH64101	Soybean	nucleus	23.06	36.2
Solyc04g071360.2.1	Tomato	nucleus	29.55	35.47
AT1G76890.2	Thale cress	nucleus	25.61	34.96
Bra015715.1-P	Field mustard	nucleus	25.35	34.67
Solyc12g056510.1.1	Tomato	nucleus	28.66	34.56
CDX87564	Canola	nucleus	18.34	33.72
KRG91651	Soybean	nucleus	26.88	33.49
KRH08698	Soybean	nucleus	26.24	33.44
KRH70307	Soybean	nucleus	25.48	33.39
CDY48546	Canola	nucleus	17.83	33.33
VIT_13s0074g00400.t01	Wine grape	nucleus	21.53	30.12
VIT_08s0007g03820.t01	Wine grape	nucleus	20.76	29.16
KRG96146	Soybean	nucleus	20.76	28.2
KRH35147	Soybean	nucleus	10.19	28.07
KRH67857	Soybean	nucleus	20.13	27.15
PGSC0003DMT400007016	Potato	nucleus	18.73	27.12
Solyc09g009250.2.1	Tomato	nucleus	18.6	26.89
PGSC0003DMT400072404	Potato	nucleus	13.89	26.27
KRH32666	Soybean	nucleus	19.75	26.09
Bra005777.1-P	Field mustard	nucleus	18.85	25.83
AT5G03680.1	Thale cress	nucleus	19.11	25.38
CDY11266	Canola	nucleus	16.31	25.1
CDX80883	Canola	nucleus	16.31	25.1
CDX70293	Canola	nucleus	18.22	25.04
Bra009518.1-P	Field mustard	nucleus	18.09	24.87
CDY44379	Canola	nucleus	18.47	24.62
Bra028824.1-P	Field mustard	nucleus	18.34	24.41
CDY10364	Canola	nucleus	15.67	24.26
CDY04893	Canola	nucleus	15.29	23.67
AT3G10000.1	Thale cress	nucleus	14.27	23.28
KRH34733	Soybean	nucleus	15.54	22.51
KRG92051	Soybean	nucleus	15.29	22.35
TraesCS6A01G013200.2	Wheat	nucleus	20.64	21.51
CDY45956	Canola	cytosol	1.4	15.49

Protein Annotations

EnsemblPlants:TraesCS5A01G558200.1	EnsemblPlantsGene:TraesCS5A01G558200	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
PANTHER:PTHR21654	PANTHER:PTHR21654:SF48	PFAM:PF13837	PFscan:PS50090	SEG:seg	SMART:SM00717
TIGR:cd12203	MapMan:15.5.20	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:708805841..708809299

Molecular Weight (calculated)

84371.2 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.835

Length

785 amino acids

Sequence
(BLAST)

001: MQQPADMPPF SPPAGAPSPI SSRPPAPAPA PAQHHQQQQQ HMDEQHGGAA VSGSGSGSVD GGEEGERGGS SSAAGGNRWP RQETLALLKI RSEMDAAFRE
101: AALKGPLWEQ VSRRLAEMGH TRSAKKCREK FENVDKYYRR TKDGRTGRGD GKTYRFFTEL EALHGAHHPP PAHVPVAPPA APAASTIAAY SAVPSAPRVL
201: QAEPSPPPLL LTHQPVPAEA AACRTTTTTP MGDASFSHDS DGEDTDETAD GGKRKRRGGS GSWGHGGKAM RFFEGLMRQV MERQEAMQSR LLEAIERRDQ
301: DRMIREEAWR RQEVARLARE QDALAQERAV AASRDAAVVS FIQRITGQIV PVHAPPSSFP AKPAATVTSV KPPPLQPTPV ASAAPAPPTP RPPVQAQPNV
401: TTPMRTQPQT PPPQPQPHAT PTATEPQPQT PQPQHQQSKE IVVHAPEQPP VDMAGGASPS RWPKAEVHAL IQLRTEMETR YQDTAPKGPL WEDISVGMRR
501: LGYNRSSKRC KEKWENINKY FKKVKESSRK RPEDSKTCPY FHQLDALYRT KALASSSGVH APALAPSPFP ARAEAAPVTV LSPVPLSSQT PPPAAQRVEH
601: GAKNVIINGN GHGNGAAMQV KASNGAGAAA MFPSPVHAAG NGGNNGTATN KVESKPEGIA KETAPVQPAV AMNHSYGRND RRDVYDLDSD SMEEDEEDDF
701: DDDDEEEDQD GVPGGCNINM PPAQYDAHFL QRQHQQQQQQ NHNHGNNHNV VRPNAVNGSG NPPAGNATPS SAPATSGTPF LGMVQ

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.