Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G387100.1 | Wheat | nucleus | 95.99 | 96.38 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 93.05 | 91.58 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 86.1 | 86.79 |
| Os04t0541100-01 | Rice | nucleus | 63.9 | 79.01 |
| OQU82045 | Sorghum | nucleus, plastid | 70.32 | 70.42 |
| Zm00001d025960_P002 | Maize | nucleus | 62.97 | 66.53 |
| Zm00001d002801_P001 | Maize | nucleus | 69.52 | 65.99 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 9.63 | 56.69 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 13.37 | 55.25 |
| CDY62151 | Canola | nucleus | 33.02 | 45.32 |
| CDX93785 | Canola | nucleus | 35.43 | 44.99 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 39.44 | 44.23 |
| CDY71745 | Canola | nucleus | 33.69 | 44.06 |
| CDX85981 | Canola | nucleus | 21.39 | 43.84 |
| Bra040010.1-P | Field mustard | nucleus | 36.23 | 43.57 |
| Bra036731.1-P | Field mustard | nucleus | 35.83 | 42.54 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 46.12 | 42.23 |
| CDY44964 | Canola | nucleus | 21.52 | 41.82 |
| AT1G33240.1 | Thale cress | nucleus | 36.63 | 40.96 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 41.58 | 39.62 |
| CDX85980 | Canola | nucleus | 10.83 | 38.21 |
| TraesCS6A01G013200.2 | Wheat | nucleus | 21.66 | 21.51 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G389200.1 | EnsemblPlantsGene:TraesCS2A01G389200 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | TIGR:cd12203 | MapMan:15.5.20 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:637678058..637681260
Molecular Weight (calculated)
81478.0 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.951
Length
748 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQHQHQGDA SQYGAPPQPA DMGPFSAQQA PAPVPLSVRP PPTQHQQQQN PQPSYDELAG ASGAGASGFP DDDMLGDSGG HSGGGLGSGG NRWPREETLA
101: LIRIRSEMDT TFRDATLKVP LWEEVSRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FQELEALHAA TAAAQHHQQH QEQLPLVVSA
201: APPPQMHAFS APQPMSAMPP PPGPMQPAPI SSAAPAPAVE PPQPPPVSLQ GLSFPCMSDS ESDDDDDSED DDMTAETGGS PDGLGKRKRG GGGSKKMMAF
301: FEGLMKQVVQ RQEEMQQRFL ETMEKREAER TAREEAWRRQ EVARLNREQE QLAQERAAAA SRDASIIAFL QRIGGQAVHV PPVVIPMPTP MQVQTSPPPK
401: KPRQHLPPPP PSQATQQPQP QPQPQPQPIP AAPLQQQPPS QPPHKETTRE EAGTPRSAPA PTSAGLSLAL VPVATEQHVV EAAGLGGGES VGGPSSSRWP
501: KTEVHALIQL RMDMDNRYQE NGPKGPLWEE ISAGMRRLGY SRNSKRCKEK WENINKYFKK VKESNKRRPE DSKTCPYFHQ LEAIYRKKHN GGGSSGAAAN
601: NAVVPVPAVA EHQNLNRHEI EIEGKKINDT DKRNNGGVGA AQVPTSNGQT TPPTATFDLG VKKPEDAVRE LNEQPHREFT TDETDSDDMG DDYTDDGEDG
701: EDDGKMQYRI QFQRPNPVGT NNAPPSPTTA ATAAPTSTPA SSFLAMVQ
101: LIRIRSEMDT TFRDATLKVP LWEEVSRKLA ELGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FQELEALHAA TAAAQHHQQH QEQLPLVVSA
201: APPPQMHAFS APQPMSAMPP PPGPMQPAPI SSAAPAPAVE PPQPPPVSLQ GLSFPCMSDS ESDDDDDSED DDMTAETGGS PDGLGKRKRG GGGSKKMMAF
301: FEGLMKQVVQ RQEEMQQRFL ETMEKREAER TAREEAWRRQ EVARLNREQE QLAQERAAAA SRDASIIAFL QRIGGQAVHV PPVVIPMPTP MQVQTSPPPK
401: KPRQHLPPPP PSQATQQPQP QPQPQPQPIP AAPLQQQPPS QPPHKETTRE EAGTPRSAPA PTSAGLSLAL VPVATEQHVV EAAGLGGGES VGGPSSSRWP
501: KTEVHALIQL RMDMDNRYQE NGPKGPLWEE ISAGMRRLGY SRNSKRCKEK WENINKYFKK VKESNKRRPE DSKTCPYFHQ LEAIYRKKHN GGGSSGAAAN
601: NAVVPVPAVA EHQNLNRHEI EIEGKKINDT DKRNNGGVGA AQVPTSNGQT TPPTATFDLG VKKPEDAVRE LNEQPHREFT TDETDSDDMG DDYTDDGEDG
701: EDDGKMQYRI QFQRPNPVGT NNAPPSPTTA ATAAPTSTPA SSFLAMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.