Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85980 | Canola | nucleus | 46.23 | 83.96 |
| CDY71745 | Canola | nucleus | 98.18 | 66.08 |
| CDY62151 | Canola | nucleus | 89.09 | 62.94 |
| Bra036731.1-P | Field mustard | nucleus | 97.4 | 59.52 |
| CDX93785 | Canola | nucleus | 84.16 | 55.01 |
| AT1G33240.1 | Thale cress | nucleus | 87.27 | 50.22 |
| CDX85981 | Canola | nucleus | 30.91 | 32.6 |
| Os02t0648300-01 | Rice | nucleus | 35.58 | 31.07 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 14.03 | 29.83 |
| Os04t0541100-01 | Rice | nucleus | 42.08 | 26.78 |
| CDX88320 | Canola | nucleus | 34.03 | 24.08 |
| CDY65284 | Canola | nucleus | 34.03 | 23.65 |
| CDX68080 | Canola | nucleus | 35.32 | 23.49 |
| CDY45957 | Canola | nucleus | 29.61 | 23.36 |
| CDY13568 | Canola | nucleus | 29.61 | 23.12 |
| CDY48545 | Canola | nucleus, plastid | 33.51 | 22.71 |
| CDY45955 | Canola | nucleus | 25.45 | 22.27 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 42.6 | 22.1 |
| OQU82045 | Sorghum | nucleus, plastid | 42.86 | 22.09 |
| CDY48546 | Canola | nucleus | 23.9 | 21.9 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 42.34 | 21.88 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 41.82 | 21.52 |
| CDY28914 | Canola | nucleus | 21.56 | 21.45 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 35.06 | 21.33 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 42.08 | 21.32 |
| CDY40550 | Canola | nucleus | 21.56 | 21.23 |
| Zm00001d002801_P001 | Maize | nucleus | 43.12 | 21.07 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 35.06 | 20.77 |
| Zm00001d017420_P001 | Maize | nucleus | 35.84 | 20.54 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 35.58 | 20.42 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 35.06 | 20.24 |
| Os10t0516500-01 | Rice | cytosol, nucleus | 12.47 | 19.67 |
| Zm00001d051316_P002 | Maize | nucleus | 33.77 | 19.46 |
| EES05815 | Sorghum | nucleus | 35.58 | 19.03 |
| Zm00001d025960_P002 | Maize | nucleus | 34.81 | 18.93 |
| CDY17716 | Canola | nucleus | 15.84 | 17.58 |
| CDY05590 | Canola | nucleus | 25.19 | 16.22 |
| CDY52502 | Canola | nucleus | 24.94 | 16.08 |
| CDX86194 | Canola | nucleus | 24.94 | 15.74 |
| CDY52482 | Canola | nucleus | 24.68 | 15.68 |
| CDX77787 | Canola | nucleus | 25.45 | 15.26 |
| CDX87564 | Canola | nucleus | 16.62 | 14.99 |
| CDX87563 | Canola | nucleus | 2.34 | 13.04 |
| CDY45956 | Canola | cytosol | 2.34 | 12.68 |
| CDX70293 | Canola | nucleus | 17.4 | 11.73 |
| CDY44379 | Canola | nucleus | 16.62 | 10.87 |
| CDY10364 | Canola | nucleus | 12.47 | 9.47 |
| CDY11266 | Canola | nucleus | 12.21 | 9.22 |
| CDX80883 | Canola | nucleus | 11.95 | 9.02 |
| CDY04893 | Canola | nucleus | 11.17 | 8.48 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 1.3 | 3.94 |
Protein Annotations
| EnsemblPlants:CDY44964 | EnsemblPlantsGene:GSBRNA2T00081133001 | Gene3D:1.10.10.60 | GO:A0A078I6B5 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF13 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY44964 |
| ProteinID:CDY44964.1 | SEG:seg | SMART:SM00717 | UniParc:UPI0004EF2019 | UniProt:A0A078I6B5 | MapMan:15.5.20 |
Description
BnaA08g06640DBnaA08g06640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6B5]
Coordinates
chrLK032607:+:75707..77013
Molecular Weight (calculated)
43932.7 Da
IEP (calculated)
5.405
GRAVY (calculated)
-1.099
Length
385 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDDDDDMD VDQAGPSSHK RKRENRGGKM MELFQGLVRQ VMQKQAAMQR SFLEALEKRE QERLAREEAW KRQEMSRLAR EHEIMAQERA ASASRDAAII
101: SLIQKITGHT IQLPHSLSSQ PSPPPPAAKL LPPPPHQPPP QQQQQEMIMS SDQSLPSSSR WPKEEILALI NLRSGMEPRY QDNVPKGLLW EEISTSMKRM
201: GYNRNAKRCK EKWENINKYY KKVKESNKKR PQDAKTCPYY HRLDLLYSSK VLGSGAGSST SSLPQDQIST IQKQSPVSAM KPSQEGDVNV HQGEEPREET
301: PQGAEKPEDL VMRELMQQKQ QQEEDSMIGE YEKIEASHNY NMEEEEMDEE LDEDEKSAAY EIAFQSPANR GGNGHSEPPF LTMVQ
101: SLIQKITGHT IQLPHSLSSQ PSPPPPAAKL LPPPPHQPPP QQQQQEMIMS SDQSLPSSSR WPKEEILALI NLRSGMEPRY QDNVPKGLLW EEISTSMKRM
201: GYNRNAKRCK EKWENINKYY KKVKESNKKR PQDAKTCPYY HRLDLLYSSK VLGSGAGSST SSLPQDQIST IQKQSPVSAM KPSQEGDVNV HQGEEPREET
301: PQGAEKPEDL VMRELMQQKQ QQEEDSMIGE YEKIEASHNY NMEEEEMDEE LDEDEKSAAY EIAFQSPANR GGNGHSEPPF LTMVQ
001: MSFWDVFDFE NPKTLFTSKK KKKKSDRTVT IKIFQLITTT KNKIKLENLN YFHVFGNRKL LELGYKRSSK KCKEKFENVQ KYYKRTKETR GGRHDGKAYK
101: FFSQLEALNT TPPSSSLDVT PLSVANPILM PSSSSSPFPV FSQPQPQTQT QPPQTHNVSF TPTPPPLPLP SMGPIFTGVT FSSHSSSTAS GMGSDDDDDD
201: MDVDQANIAG SSSRKRKRGN RGGGGKMMEL FEGLVRQVMQ KQAAMQRSFL EALEKREQER LDREEAWKRQ EMARLAREHE VMSQERAASA SRDAAIISLI
301: QKITGHTIQL PPSLSSQPPP PYQPPPAVTK RVAEPPLSTA QSQSQQPIMA IPQQQILPPP PPSHPHAHQP EQKQQQQPQQ EMVMSSEQSS LPSSSRWPKA
401: EILALINLRS GMEPRYQDNV PKGLLWEEIS TSMKRMGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPQDA KTCPYFHRLD LLYRNKVLGS GGGSSTSGLP
501: QDQKQSPVTA MKPPQEGLVN VQQTHGSAST EEEEPIEESP QGTEKPEDLV MRELIQQQQQ LQQQESMIGE YEKIEESHNY NNMEEEEDQE MDEEELDEDE
601: KSAAFEIAFQ SPANRGGNGH TEPPFLTMVQ
101: FFSQLEALNT TPPSSSLDVT PLSVANPILM PSSSSSPFPV FSQPQPQTQT QPPQTHNVSF TPTPPPLPLP SMGPIFTGVT FSSHSSSTAS GMGSDDDDDD
201: MDVDQANIAG SSSRKRKRGN RGGGGKMMEL FEGLVRQVMQ KQAAMQRSFL EALEKREQER LDREEAWKRQ EMARLAREHE VMSQERAASA SRDAAIISLI
301: QKITGHTIQL PPSLSSQPPP PYQPPPAVTK RVAEPPLSTA QSQSQQPIMA IPQQQILPPP PPSHPHAHQP EQKQQQQPQQ EMVMSSEQSS LPSSSRWPKA
401: EILALINLRS GMEPRYQDNV PKGLLWEEIS TSMKRMGYNR NAKRCKEKWE NINKYYKKVK ESNKKRPQDA KTCPYFHRLD LLYRNKVLGS GGGSSTSGLP
501: QDQKQSPVTA MKPPQEGLVN VQQTHGSAST EEEEPIEESP QGTEKPEDLV MRELIQQQQQ LQQQESMIGE YEKIEESHNY NNMEEEEDQE MDEEELDEDE
601: KSAAFEIAFQ SPANRGGNGH TEPPFLTMVQ
Arabidopsis Description
AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.