CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68080	Canola	nucleus	90.85	89.12
CDY45956	Canola	cytosol	10.04	80.28
CDX88320	Canola	nucleus	75.88	79.23
CDY65284	Canola	nucleus	76.58	78.52
CDX87563	Canola	nucleus	9.33	76.81
AT1G76880.1	Thale cress	nucleus	80.99	76.29
CDY45955	Canola	nucleus	58.98	76.14
CDX87564	Canola	nucleus	48.06	63.93
CDY45957	Canola	nucleus	40.85	47.54
CDY13568	Canola	nucleus	41.2	47.46
KRH70308	Soybean	nucleus	52.46	47.23
KRH08699	Soybean	nucleus	52.46	45.5
KRG91649	Soybean	nucleus	50.18	44.25
CDY48546	Canola	nucleus	32.22	43.57
KRH35149	Soybean	nucleus	50.7	43.18
CDY62151	Canola	nucleus	36.8	38.35
CDY71745	Canola	nucleus	36.44	36.19
CDX93785	Canola	nucleus	37.5	36.16
CDX85981	Canola	nucleus	22.71	35.34
CDY44964	Canola	nucleus	22.71	33.51
CDX85980	Canola	nucleus	11.62	31.13
GSMUA_Achr8P11770_001	Banana	nucleus	9.15	30.41
Zm00001d013849_P001	Maize	nucleus	40.85	29.86
Zm00001d032453_P001	Maize	nucleus	40.85	29.59
EER91374	Sorghum	nucleus	41.37	29.12
TraesCS1B01G203300.2	Wheat	nucleus	41.02	28.62
TraesCSU01G029700.1	Wheat	nucleus	39.61	28.59
TraesCS1D01G162400.1	Wheat	nucleus, plastid	41.02	28.52
TraesCS1A01G176700.2	Wheat	nucleus	41.02	28.52
HORVU1Hr1G046940.4	Barley	nucleus	41.55	28.5
TraesCS4B01G396900.1	Wheat	nucleus	34.68	28.47
HORVU4Hr1G089120.1	Barley	nucleus, plastid	39.61	28.37
KXG40355	Sorghum	nucleus, plastid	38.91	28.3
TraesCS5A01G558200.1	Wheat	nucleus, plastid	38.91	28.15
Zm00001d027335_P001	Maize	nucleus	37.32	26.21
CDX70293	Canola	nucleus	23.77	23.64
CDY28914	Canola	nucleus	16.02	23.51
CDY40550	Canola	nucleus	16.02	23.27
CDY44379	Canola	nucleus	23.94	23.09
CDX80883	Canola	nucleus	20.07	22.35
CDY11266	Canola	nucleus	20.07	22.35
CDY10364	Canola	nucleus	19.89	22.29
CDY04893	Canola	nucleus	19.19	21.5
CDY52502	Canola	nucleus	22.18	21.11
CDY05590	Canola	nucleus	22.01	20.9
CDY17716	Canola	nucleus	12.5	20.46
CDX86194	Canola	nucleus	21.65	20.16
CDY52482	Canola	nucleus	21.48	20.13
CDX77787	Canola	nucleus	18.31	16.2

Protein Annotations

EnsemblPlants:CDY48545	EnsemblPlantsGene:GSBRNA2T00091264001	Gene3D:1.10.10.60	GO:A0A078ICF3	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF19	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY48545
ProteinID:CDY48545.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EDE7EF	UniProt:A0A078ICF3	MapMan:15.5.20

Description

BnaC06g18750DBnaC06g18750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICF3]

Coordinates

chrLK032778:+:6824..9703

Molecular Weight (calculated)

63796.0 Da

IEP (calculated)

5.651

GRAVY (calculated)

-1.025

Length

568 amino acids

Sequence
(BLAST)

001: MMQLGGTTTT AATSAAPPPS NDSAAAAAAA TVGAFEVSEE MNDRGFGGNR WPRQETLALL KIRSDMGIAF RDASVKGPLW EEVSRKMAEL GYIRNAKKCK
101: EKFENVYKYH KRTKEGRTGK SEGKTYRFFD QLEALETRPT SSSIHHQQQQ QPPPQTQPQP LQPQPPLRPH NNNSPMFSTS PPVTTITPQI TNTTFPPYTQ
201: PANVPSFPNI SGDFLSDNST SSSRSTSSDF FERLTRQVVD KQEELQRKFL EAVEKREDER LVREESWRVQ EIARINRERD ILAQERSMSA AKDAAVMAFL
301: QKLSEKPNPQ GQSIIPQPQP QPQQAPSQMQ PTQPVTPTVD TSKTDNGDQN MTPVSASAAG AVSSSRWPKV EIEALIKLRT NLDSKYQENG PKGPLWEEIS
401: AGMKRLGFNR NSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRERNKFH TNNNVIASSS STSGLVKPDN SVPLMVQPEQ QWPPAMATTT
501: VTSTVAATAQ PDQHPPPQPL DKNFDDEEGT DGEEYDDEED YEENEEEEGG EFELMPSNNN NNKPTNNM

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.