CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71745	Canola	nucleus	94.31	89.86
CDY44964	Canola	nucleus	62.94	89.09
Bra036731.1-P	Field mustard	nucleus	95.05	82.22
CDX85980	Canola	nucleus	30.09	77.36
CDX93785	Canola	nucleus	82.75	76.57
CDX85981	Canola	nucleus	50.64	75.62
AT1G33240.1	Thale cress	nucleus	88.07	71.75
HORVU6Hr1G025060.1	Barley	nucleus	11.01	47.24
CDY45955	Canola	nucleus	32.48	40.23
CDY45957	Canola	nucleus	35.05	39.14
CDY13568	Canola	nucleus	35.23	38.95
CDX88320	Canola	nucleus	38.35	38.42
CDY65284	Canola	nucleus	37.98	37.36
CDX68080	Canola	nucleus	39.27	36.96
CDY48545	Canola	nucleus, plastid	38.35	36.8
HORVU6Hr1G025090.1	Barley	cytosol, nucleus, plastid	11.93	35.91
CDY48546	Canola	nucleus	26.42	34.29
HORVU6Hr1G061300.6	Barley	nucleus	39.63	34.12
TraesCS2D01G387100.1	Wheat	nucleus	45.87	33.56
Os04t0541100-01	Rice	nucleus	37.25	33.55
OQU82045	Sorghum	nucleus, plastid	45.87	33.47
TraesCS2A01G389200.1	Wheat	nucleus	45.32	33.02
CDX87564	Canola	nucleus	25.87	33.02
Zm00001d017420_P001	Maize	nucleus	40.55	32.89
HORVU2Hr1G092650.3	Barley	nucleus	44.77	32.88
TraesCS6B01G284400.3	Wheat	nucleus, plastid	39.08	32.77
Zm00001d002801_P001	Maize	nucleus	47.34	32.74
TraesCS2B01G407400.1	Wheat	nucleus	45.14	32.37
TraesCS6A01G240200.1	Wheat	nucleus	39.45	32.23
Zm00001d025960_P002	Maize	nucleus	41.65	32.06
TraesCS6D01G222500.1	Wheat	nucleus	39.45	32.04
Os02t0648300-01	Rice	nucleus	25.32	31.29
Zm00001d051316_P002	Maize	nucleus	38.35	31.29
EES05815	Sorghum	nucleus	40.73	30.83
CDY28914	Canola	nucleus	19.45	27.39
CDY40550	Canola	nucleus	19.27	26.85
CDY05590	Canola	nucleus	26.05	23.75
CDY52502	Canola	nucleus	25.69	23.45
CDY17716	Canola	nucleus	14.86	23.34
CDX70293	Canola	nucleus	24.04	22.94
CDY52482	Canola	nucleus	25.32	22.77
CDX86194	Canola	nucleus	25.32	22.62
CDX80883	Canola	nucleus	20.73	22.16
CDY11266	Canola	nucleus	20.73	22.16
CDY10364	Canola	nucleus	20.55	22.09
CDY44379	Canola	nucleus	23.85	22.07
CDY04893	Canola	nucleus	19.27	20.71
Os10t0516500-01	Rice	cytosol, nucleus	8.44	18.85
CDX77787	Canola	nucleus	21.47	18.22
CDX87563	Canola	nucleus	1.1	8.7
CDY45956	Canola	cytosol	1.1	8.45

Protein Annotations

EnsemblPlants:CDY62151	EnsemblPlantsGene:GSBRNA2T00036004001	Gene3D:1.10.10.60	GO:A0A078JCB4	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF13	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY62151
ProteinID:CDY62151.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EF300E	UniProt:A0A078JCB4	MapMan:15.5.20

Description

BnaCnng39380DBnaCnng39380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCB4]

Coordinates

chrLK034105:-:22608..25676

Molecular Weight (calculated)

61143.0 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.981

Length

545 amino acids

Sequence
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGFGGGGGSS SSSSGNRWPR EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK
101: RNAKKCKEKF ENVQKYHKRT KETRGGRHEG KTYKFFSQLE ALNTSTTPAP PSSLDVTPLS VANPVQQPSS SSSQFPVFSL TQTPPPSSTA SGMGSHKRKR
201: ENRGTGGGKM MELFEGLVRQ VMQKQAAMQR SFLEALEKRE QERLAREEAW KRQEMSRLAR EHEIMAQERA ASASRDAAII SLIQKITGHT IQLPHSLSSQ
301: PSPPPPAAKL LPPPPPHQPQ QQQQQEMIMS SDQSLPSSSR WPKEEILALI NLRSGMEPRY QDNVPKGLLW EEISTSMKRM GYNRNAKRCK EKWENINKYY
401: KKVKESNKKR PQDAKTCPYY HRLDLLYSSK VLGSGAGSST SSLPQDQIST IQKQKPREET PQGAEKPEDL VMRELMQQKQ QQEEDSMIGE YEKIEASHNY
501: NMEEEEMDEE LDDDEKSAAY EIAFQSPANR GGNGHSEPPF LTMVQ

Best Arabidopsis Sequence Match ( AT1G33240.1 )
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ

Arabidopsis Description

AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.