CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74283	nucleus
CDX91963	nucleus
CDY34697	nucleus
CDY37545	nucleus
CDY43267	nucleus
CDY55800	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	CDX74283	AT3G01090.2	25697797
AT5G03680.1	CDX91963	AT3G01090.2	25697797
AT5G03680.1	CDY34697	AT3G01090.2	25697797
AT5G03680.1	CDY37545	AT3G01090.2	25697797
AT5G03680.1	CDY43267	AT3G01090.2	25697797
AT5G03680.1	CDY55800	AT3G01090.2	25697797
AT5G03680.1	CDX74283	AT3G01090.2	25697797
AT5G03680.1	CDX91963	AT3G01090.2	25697797
AT5G03680.1	CDY34697	AT3G01090.2	25697797
AT5G03680.1	CDY37545	AT3G01090.2	25697797
AT5G03680.1	CDY43267	AT3G01090.2	25697797
AT5G03680.1	CDY55800	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80883	Canola	nucleus	92.75	92.75
Bra005777.1-P	Field mustard	nucleus	99.22	88.31
CDY04893	Canola	nucleus	81.76	82.25
CDY10364	Canola	nucleus	81.37	81.85
CDY44379	Canola	nucleus	85.88	74.36
AT5G03680.1	Thale cress	nucleus	85.29	73.6
CDX70293	Canola	nucleus	82.35	73.56
PGSC0003DMT400072404	Potato	nucleus	35.69	43.86
KRG96146	Soybean	nucleus	47.25	41.7
VIT_08s0007g03820.t01	Wine grape	nucleus	44.71	40.79
KRH67857	Soybean	nucleus	46.47	40.72
PGSC0003DMT400007016	Potato	nucleus	41.37	38.93
Solyc09g009250.2.1	Tomato	nucleus	41.37	38.86
GSMUA_Achr8P07630_001	Banana	nucleus	29.41	37.69
KRH32666	Soybean	nucleus	43.73	37.54
CDX85981	Canola	nucleus	19.02	26.58
CDY45955	Canola	nucleus	21.18	24.55
CDX87564	Canola	nucleus	20.39	24.36
CDY65284	Canola	nucleus	23.92	22.02
CDX88320	Canola	nucleus	23.33	21.88
CDY45957	Canola	nucleus	20.78	21.72
CDY13568	Canola	nucleus	20.98	21.7
CDY62151	Canola	nucleus	22.16	20.73
CDX68080	Canola	nucleus	22.94	20.21
CDY48545	Canola	nucleus, plastid	22.35	20.07
CDY71745	Canola	nucleus	21.96	19.58
CDX93785	Canola	nucleus	22.55	19.52
Zm00001d032453_P001	Maize	nucleus	27.25	17.73
HORVU1Hr1G046940.4	Barley	nucleus	28.24	17.39
Zm00001d013849_P001	Maize	nucleus	26.47	17.37
TraesCS1D01G162400.1	Wheat	nucleus, plastid	27.65	17.26
TraesCS1A01G176700.2	Wheat	nucleus	27.45	17.14
TraesCS1B01G203300.2	Wheat	nucleus	27.25	17.08
CDY48546	Canola	nucleus	13.92	16.9
EER91374	Sorghum	nucleus	26.47	16.73
HORVU4Hr1G089120.1	Barley	nucleus, plastid	25.69	16.52
KXG40355	Sorghum	nucleus, plastid	25.1	16.39
TraesCS5A01G558200.1	Wheat	nucleus, plastid	25.1	16.31
TraesCSU01G029700.1	Wheat	nucleus	25.1	16.26
Zm00001d027335_P001	Maize	nucleus	25.49	16.07
TraesCS4B01G396900.1	Wheat	nucleus	20.98	15.46
CDY05590	Canola	nucleus	17.65	15.05
CDY52502	Canola	nucleus	17.25	14.74
CDY28914	Canola	nucleus	11.18	14.73
CDY40550	Canola	nucleus	11.18	14.58
CDY52482	Canola	nucleus	17.06	14.36
CDY17716	Canola	nucleus	9.41	13.83
CDX86194	Canola	nucleus	16.47	13.77
CDY44964	Canola	nucleus	9.22	12.21
CDX77787	Canola	nucleus	13.14	10.44
CDX85980	Canola	nucleus	3.92	9.43
CDX87563	Canola	nucleus	0.78	5.8
CDY45956	Canola	cytosol	0.78	5.63

Protein Annotations

EnsemblPlants:CDY11266	EnsemblPlantsGene:GSBRNA2T00049297001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY11266	ProteinID:CDY11266.1
SEG:seg	UniParc:UPI0004EF079E	UniProt:A0A078FD68	MapMan:15.5.20	:	:

Description

BnaA03g01020DBnaA03g01020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FD68]

Coordinates

chrLK032010:+:441218..444023

Molecular Weight (calculated)

57940.3 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.987

Length

510 amino acids

Sequence
(BLAST)

001: MEDHHTQYGI PELRQLMEGE GRTTTTASPS TSHFPSDFFG FNLTPAAPPP PPQHHRLHQF TINQEMGFLP HGIHGLGGGS STAGNNSNLN MSTSGGGVGF
101: SGFLDGGGLG GSGGTGRWPR QETLTLLEIR SRLDHKFKEA NQKGPFWDEV SRIMSEEYRY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL
201: EALYGDSNNL VSFPNHNTQF MSHALGFHTQ NAMNITATTS NIHDVDSAHG LLHHQSLSIS NNYNSSELEL MTSSSEGNDS DSRRKKRSWK AKIKEFIDVN
301: MKRLIERQDI WLEKLTKVIE DKEEQRMMKE EEWRKSEAAR VEQVHLFWAK ERERMEARDV AVLEALQYLA GKTLIKPSCS SPEERINGNN EIQNNSENEK
401: WECISNGMRK EKKQISKKRK DNSSSCGVYY PRTEENAIYN NQESGYDDND QHHHQMNEQD NVVSSTSNAA AGDLRGAMAA STSCFPFVMG DGDQNLWESY
501: SLRLSKGENQ

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.