Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | nucleus |
| GSMUA_AchrUn_... | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03680.1 | GSMUA_Achr10P... | AT3G01090.2 | 25697797 |
| AT5G03680.1 | GSMUA_AchrUn_... | AT3G01090.2 | 25697797 |
| AT5G03680.1 | GSMUA_Achr10P... | AT3G01090.2 | 25697797 |
| AT5G03680.1 | GSMUA_AchrUn_... | AT3G01090.2 | 25697797 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072404 | Potato | nucleus | 35.68 | 34.22 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 45.98 | 32.74 |
| Solyc09g009250.2.1 | Tomato | nucleus | 43.72 | 32.04 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 44.97 | 31.91 |
| PGSC0003DMT400007016 | Potato | nucleus | 42.96 | 31.55 |
| KRG96146 | Soybean | nucleus | 43.72 | 30.1 |
| CDY04893 | Canola | nucleus | 38.19 | 29.98 |
| CDY10364 | Canola | nucleus | 37.94 | 29.78 |
| KRH67857 | Soybean | nucleus | 43.22 | 29.55 |
| AT3G10000.1 | Thale cress | nucleus | 35.68 | 29.52 |
| CDY11266 | Canola | nucleus | 37.69 | 29.41 |
| Bra009518.1-P | Field mustard | nucleus | 41.96 | 29.25 |
| CDX80883 | Canola | nucleus | 37.44 | 29.22 |
| CDY44379 | Canola | nucleus | 43.22 | 29.2 |
| CDX70293 | Canola | nucleus | 41.71 | 29.07 |
| Bra028824.1-P | Field mustard | nucleus | 42.71 | 28.81 |
| AT5G03680.1 | Thale cress | nucleus | 42.71 | 28.76 |
| Bra005777.1-P | Field mustard | nucleus | 40.95 | 28.45 |
| KRG92051 | Soybean | nucleus | 38.19 | 28.31 |
| KRH32666 | Soybean | nucleus | 42.21 | 28.28 |
| KRH34733 | Soybean | nucleus | 38.44 | 28.23 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 9.55 | 22.22 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 31.16 | 21.49 |
| GSMUA_Achr11P... | Banana | nucleus | 29.65 | 18.47 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 29.15 | 18.12 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 28.89 | 17.94 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 30.15 | 17.17 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 28.39 | 17.12 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 23.62 | 16.88 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 28.14 | 16.74 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 29.4 | 16.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.83 | 14.29 |
| GSMUA_Achr7P04610_001 | Banana | nucleus | 14.07 | 11.57 |
| GSMUA_Achr1P24120_001 | Banana | nucleus | 19.35 | 11.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.31 | 6.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 2.26 | 4.21 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P07630_001 | EnsemblPlants:GSMUA_Achr8T07630_001 | EnsemblPlantsGene:GSMUA_Achr8G07630_001 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF5 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | UniParc:UPI000296A6B3 |
| UniProt:M0TNG6 | MapMan:15.5.20 | : | : | : | : |
Description
AT-GTL1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G07630_001]
Coordinates
chr8:-:5091749..5093207
Molecular Weight (calculated)
44665.5 Da
IEP (calculated)
7.658
GRAVY (calculated)
-0.832
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLHELHDLI AERKPRFTSV SDLLANQALF MGQRYRFVPA ACPEQYGMFM PGTGSEVGLP PQPPPPPPPA TECFEFSGGG GGGGGQGRWP RQETLTLLEV
101: RSRLDSSFRE AARRGPLWDE VSRIMAEEHG YRRSGKKCRE KLENLYKYYK KTKEGKAGRQ DGKHYRFCRQ LEALYGESSN IVATEINQRC SDHATNAAAT
201: LPAADRGACK APKLSWSISL SSSGECNEAS STEEEVDGST GRLIKTGGES WKSKVEEFIG AQIKRLMEAQ ATWMNQMLKT LEHMELARIS REEDWRREEA
301: ARLDRERILR AGERAWSEAR DAAIVQALEK MSRRELKPRP REETNGNFWT DDNSMAPRWP SREGRRGEGG LGVEVPAAVA CVGCSSSSTE RCKEKWDE
101: RSRLDSSFRE AARRGPLWDE VSRIMAEEHG YRRSGKKCRE KLENLYKYYK KTKEGKAGRQ DGKHYRFCRQ LEALYGESSN IVATEINQRC SDHATNAAAT
201: LPAADRGACK APKLSWSISL SSSGECNEAS STEEEVDGST GRLIKTGGES WKSKVEEFIG AQIKRLMEAQ ATWMNQMLKT LEHMELARIS REEDWRREEA
301: ARLDRERILR AGERAWSEAR DAAIVQALEK MSRRELKPRP REETNGNFWT DDNSMAPRWP SREGRRGEGG LGVEVPAAVA CVGCSSSSTE RCKEKWDE
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Arabidopsis Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.