Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 61.66 | 70.74 |
GSMUA_Achr1P04100_001 | Banana | nucleus | 56.49 | 56.32 |
GSMUA_Achr9P18800_001 | Banana | nucleus | 49.3 | 54.59 |
GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 52.9 | 51.21 |
GSMUA_Achr4P24780_001 | Banana | nucleus | 53.52 | 51.12 |
GSMUA_Achr2P11910_001 | Banana | nucleus | 49.3 | 49.22 |
GSMUA_Achr4P29130_001 | Banana | nucleus | 51.8 | 47.35 |
GSMUA_Achr8P11770_001 | Banana | nucleus | 12.21 | 45.61 |
Zm00001d032453_P001 | Maize | nucleus | 53.36 | 43.49 |
Zm00001d013849_P001 | Maize | nucleus | 51.49 | 42.34 |
GSMUA_Achr2P00580_001 | Banana | nucleus | 46.32 | 42.23 |
EER91374 | Sorghum | nucleus | 53.21 | 42.13 |
TraesCS1A01G176700.2 | Wheat | nucleus | 53.68 | 41.98 |
TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 53.36 | 41.74 |
HORVU1Hr1G046940.4 | Barley | nucleus | 53.99 | 41.67 |
TraesCS1B01G203300.2 | Wheat | nucleus | 52.74 | 41.4 |
KXG40355 | Sorghum | nucleus, plastid | 49.77 | 40.72 |
Zm00001d027335_P001 | Maize | nucleus | 49.3 | 38.94 |
HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 47.73 | 38.46 |
TraesCSU01G029700.1 | Wheat | nucleus | 47.1 | 38.25 |
TraesCS4B01G396900.1 | Wheat | nucleus | 41.0 | 37.86 |
TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 46.48 | 37.83 |
GSMUA_Achr8P07630_001 | Banana | nucleus | 18.47 | 29.65 |
GSMUA_Achr7P04610_001 | Banana | nucleus | 20.03 | 26.45 |
GSMUA_AchrUn_... | Banana | nucleus | 8.61 | 25.7 |
GSMUA_Achr1P24120_001 | Banana | nucleus | 23.79 | 22.72 |
GSMUA_AchrUn_... | Banana | nucleus | 19.87 | 18.19 |
GSMUA_AchrUn_... | Banana | nucleus | 12.68 | 17.27 |
Protein Annotations
EnsemblPlants:GSMUA_Achr11P03520_001 | EnsemblPlants:GSMUA_Achr11T03520_001 | EnsemblPlantsGene:GSMUA_Achr11G03520_001 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
InterPro:SANT/Myb | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
SMART:SM00717 | UniParc:UPI000294C070 | UniProt:M0RP32 | MapMan:15.5.20 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G03520_001]
Coordinates
chr11:+:2539263..2542148
Molecular Weight (calculated)
69354.0 Da
IEP (calculated)
5.793
GRAVY (calculated)
-0.960
Length
639 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQQEGGSQ FGGPSSETAG HRVGAFLQPP PLLAEAASPI SSRRPPPEDA AADFDEMGPA VAGGGFPDED AERGGAPGNR WPRQETLALL KIRSEMDAAF
101: RDATIKGPLW EEVSRKLAEL GYERSAKKCK EKFENVHKYY KRKKDGRAGR QDGKTYRFYS ELEALHSTGR GGATTPAAIA ALSPISGGAP PPVTMPTSVV
201: PEHGAQGVSS SAAAAAAAGL GFSSNSSSSS SSESDDADTE EAGGVGKGRK RKHRGSARYR RQMMAFFEGL MKQVMERQEA MQQRFLDAID KREQDRMKRE
301: EAWRLQEMSR LSREQELLVQ ERSMAASRDS AVVSYLQKIS GQSIPLAAAA SIAPRPPQPS EAQEGQGSGS FEPTSSSRWP KAEVHALIDL RSSLESSYQD
401: SGPKGPLWEE ISTGMQRLGY NRSAKRCKEK WENINKYFKK VKEGNRKRPE DSKTCPYFHQ LDALYRKKLL GSSGGGTSSS SVGVKPQQEP ISQEQHQQRP
501: ATKTPGDSGN DNGNSNGGNA EAGEGRDGAQ VQTSEGGHRP TFFEEAMKKP EDIVKEPMER RQRQPVMDDP DKVDEPDSNN LHEDEEDDDD NEDDEDSKMQ
601: YEIQFQRQSV SGGGGGGNAS TTASAAATTA AGSFLAVVQ
101: RDATIKGPLW EEVSRKLAEL GYERSAKKCK EKFENVHKYY KRKKDGRAGR QDGKTYRFYS ELEALHSTGR GGATTPAAIA ALSPISGGAP PPVTMPTSVV
201: PEHGAQGVSS SAAAAAAAGL GFSSNSSSSS SSESDDADTE EAGGVGKGRK RKHRGSARYR RQMMAFFEGL MKQVMERQEA MQQRFLDAID KREQDRMKRE
301: EAWRLQEMSR LSREQELLVQ ERSMAASRDS AVVSYLQKIS GQSIPLAAAA SIAPRPPQPS EAQEGQGSGS FEPTSSSRWP KAEVHALIDL RSSLESSYQD
401: SGPKGPLWEE ISTGMQRLGY NRSAKRCKEK WENINKYFKK VKEGNRKRPE DSKTCPYFHQ LDALYRKKLL GSSGGGTSSS SVGVKPQQEP ISQEQHQQRP
501: ATKTPGDSGN DNGNSNGGNA EAGEGRDGAQ VQTSEGGHRP TFFEEAMKKP EDIVKEPMER RQRQPVMDDP DKVDEPDSNN LHEDEEDDDD NEDDEDSKMQ
601: YEIQFQRQSV SGGGGGGNAS TTASAAATTA AGSFLAVVQ
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.