Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005108_P003 | nucleus |
| Zm00001d010811_P002 | nucleus |
| Zm00001d038745_P002 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG40355 | Sorghum | nucleus, plastid | 79.36 | 82.2 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 45.74 | 53.47 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 51.17 | 52.74 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 51.3 | 52.33 |
| TraesCSU01G029700.1 | Wheat | nucleus | 50.68 | 52.1 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 34.98 | 50.81 |
| GSMUA_Achr11P... | Banana | nucleus | 38.94 | 49.3 |
| Zm00001d032453_P001 | Maize | nucleus | 46.72 | 48.21 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 11.5 | 47.21 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 33.5 | 46.97 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 36.96 | 46.65 |
| Zm00001d013849_P001 | Maize | nucleus | 44.5 | 46.33 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 37.33 | 45.14 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 34.24 | 43.28 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 34.98 | 42.88 |
| CDY13568 | Canola | nucleus | 24.97 | 40.97 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 35.11 | 40.63 |
| CDY45957 | Canola | nucleus | 24.47 | 40.57 |
| VIT_04s0044g00510.t01 | Wine grape | nucleus | 25.46 | 40.39 |
| Zm00001d025960_P002 | Maize | nucleus | 35.23 | 40.25 |
| Solyc11g005380.1.1 | Tomato | nucleus | 24.35 | 39.8 |
| CDY45955 | Canola | nucleus | 21.63 | 39.77 |
| Zm00001d002801_P001 | Maize | nucleus | 38.69 | 39.72 |
| PGSC0003DMT400010112 | Potato | nucleus | 24.35 | 39.16 |
| KRG91649 | Soybean | nucleus | 31.03 | 38.98 |
| Bra008286.1-P | Field mustard | nucleus | 24.85 | 38.88 |
| Bra015716.1-P | Field mustard | nucleus | 26.45 | 38.84 |
| Bra003702.1-P | Field mustard | nucleus | 21.88 | 38.65 |
| CDX88320 | Canola | nucleus | 25.83 | 38.42 |
| CDY65284 | Canola | nucleus | 26.21 | 38.27 |
| Zm00001d017420_P001 | Maize | nucleus | 31.77 | 38.24 |
| KRH53849 | Soybean | nucleus | 23.36 | 38.03 |
| Bra008285.1-P | Field mustard | nucleus | 26.08 | 38.02 |
| KRH38181 | Soybean | nucleus | 22.99 | 37.96 |
| KRH70308 | Soybean | nucleus | 29.3 | 37.56 |
| CDX68080 | Canola | nucleus | 26.82 | 37.48 |
| CDY48545 | Canola | nucleus, plastid | 26.21 | 37.32 |
| KRH64101 | Soybean | nucleus | 22.99 | 37.2 |
| KRH35149 | Soybean | nucleus | 30.66 | 37.18 |
| PGSC0003DMT400061942 | Potato | nucleus | 28.8 | 37.1 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 32.14 | 37.09 |
| Zm00001d051316_P002 | Maize | nucleus | 30.53 | 36.98 |
| KRH08699 | Soybean | nucleus | 29.91 | 36.95 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 29.05 | 36.38 |
| AT1G76880.1 | Thale cress | nucleus | 27.07 | 36.32 |
| Solyc04g071360.2.1 | Tomato | nucleus | 29.3 | 36.24 |
| CDY48546 | Canola | nucleus | 18.79 | 36.19 |
| Bra015715.1-P | Field mustard | nucleus | 25.59 | 36.06 |
| AT1G76890.2 | Thale cress | nucleus | 25.59 | 36.0 |
| Bra003703.1-P | Field mustard | nucleus | 26.95 | 35.56 |
| Solyc12g056510.1.1 | Tomato | nucleus | 28.43 | 35.33 |
| KRH70307 | Soybean | nucleus | 25.59 | 34.56 |
| KRH08698 | Soybean | nucleus | 25.71 | 33.77 |
| KRG91651 | Soybean | nucleus | 25.22 | 32.38 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 21.38 | 30.95 |
| CDX87564 | Canola | nucleus | 16.07 | 30.45 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 20.77 | 29.95 |
| KRG96146 | Soybean | nucleus | 21.14 | 29.58 |
| KRH67857 | Soybean | nucleus | 20.89 | 29.04 |
| PGSC0003DMT400007016 | Potato | nucleus | 18.91 | 28.23 |
| Solyc09g009250.2.1 | Tomato | nucleus | 18.54 | 27.62 |
| KRH32666 | Soybean | nucleus | 19.9 | 27.1 |
| PGSC0003DMT400072404 | Potato | nucleus | 13.84 | 26.99 |
| Bra005777.1-P | Field mustard | nucleus | 18.66 | 26.35 |
| AT5G03680.1 | Thale cress | nucleus | 19.04 | 26.06 |
| KRH35147 | Soybean | nucleus | 9.15 | 25.96 |
| CDX70293 | Canola | nucleus | 18.29 | 25.92 |
| Bra009518.1-P | Field mustard | nucleus | 18.17 | 25.74 |
| CDX80883 | Canola | nucleus | 16.19 | 25.69 |
| CDY11266 | Canola | nucleus | 16.07 | 25.49 |
| CDY44379 | Canola | nucleus | 18.54 | 25.47 |
| Bra028824.1-P | Field mustard | nucleus | 18.54 | 25.42 |
| CDY10364 | Canola | nucleus | 15.57 | 24.85 |
| CDY04893 | Canola | nucleus | 15.45 | 24.65 |
| Zm00001d014938_P001 | Maize | nucleus | 19.53 | 23.8 |
| AT3G10000.1 | Thale cress | nucleus | 13.97 | 23.49 |
| KRG92051 | Soybean | nucleus | 14.96 | 22.53 |
| KRH34733 | Soybean | nucleus | 14.96 | 22.32 |
| Zm00001d054080_P001 | Maize | nucleus | 18.79 | 21.29 |
| CDY45956 | Canola | cytosol | 1.61 | 18.31 |
Protein Annotations
| EnsemblPlants:Zm00001d027335_P001 | EnsemblPlants:Zm00001d027335_T001 | EnsemblPlantsGene:Zm00001d027335 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:ONL92871.1 |
| SEG:seg | SMART:SM00717 | UniParc:UPI000843B67A | UniProt:A0A1D6JL37 | MapMan:15.5.20 | : |
Description
Trihelix-transcription factor 18Trihelix transcription factor GT-2
Coordinates
chr1:-:3172313..3176736
Molecular Weight (calculated)
84906.0 Da
IEP (calculated)
7.028
GRAVY (calculated)
-0.736
Length
809 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPAMPPPF SPAAAGQHAT PISSRPPEPH PHPHPQQQGD ELGGGSAAFS GGSSLVVVLD HDGGAPAGDG GPSGGNRWPR QETLALLKIR SEMDAAFREA
101: ALKGPLWDQV SRRLEAMGYK RSAKKCREKF ENVDKYYKRT KDGRAGRGDG KAYRFFSELE ALHGAAPAVA SLARRPVAMA PAPPPPVTAL VGASTGMAPT
201: ALHAEPPPMP QPAAPAPTGT GTGTGTGSVT ATIAPPAGAA ASDAAAAAAC MMTPGDVSFS SGSDGEDTDE TGGGSGKRKR DGGEDEDGFG GSISSKMMRF
301: FEGLMRQVME RQEEMQRRFI EAIERREQDR MIREEAWRRQ EVARLAREQD ALAQERAMAV SRDAAVVSFI QRVTGQNIPM PVPSPVAPPP AFITALTHAP
401: PLQPTPVASA APAAPAPAQA QHQPPPPAHQ LSPKKPQTVM PLTPQAPQQP QVQPRQAPSP SPSPATHPQG NKEIVVRAPP PAESQDTAGF GGGAPSPSRW
501: PKAEVHALIQ LRTEMETRYQ DSGPKGPLWE DISSGMRRLG YNRSAKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYYH QLDALYRSKA LASSSSGPGA
601: APALPPPPPP PQRPDQQAAA AAPPVTVVLA PVPLSQTGPH GNGNGNGNGC AGRGSSDNGG GGSGGMQKQQ ASNGGVAAAR FSAVDGAGGN GVATNKREEG
701: IVRKEEAVAA ETRPQPVSMN DSYVDSDSSM DDDEEDDFYD DDDEGDVGDG GNNKMQYEIQ FQQQHQHVQP QQQQNQSGGG VRPNASGSAG AGAGPAATTS
801: GSFLTMVHH
101: ALKGPLWDQV SRRLEAMGYK RSAKKCREKF ENVDKYYKRT KDGRAGRGDG KAYRFFSELE ALHGAAPAVA SLARRPVAMA PAPPPPVTAL VGASTGMAPT
201: ALHAEPPPMP QPAAPAPTGT GTGTGTGSVT ATIAPPAGAA ASDAAAAAAC MMTPGDVSFS SGSDGEDTDE TGGGSGKRKR DGGEDEDGFG GSISSKMMRF
301: FEGLMRQVME RQEEMQRRFI EAIERREQDR MIREEAWRRQ EVARLAREQD ALAQERAMAV SRDAAVVSFI QRVTGQNIPM PVPSPVAPPP AFITALTHAP
401: PLQPTPVASA APAAPAPAQA QHQPPPPAHQ LSPKKPQTVM PLTPQAPQQP QVQPRQAPSP SPSPATHPQG NKEIVVRAPP PAESQDTAGF GGGAPSPSRW
501: PKAEVHALIQ LRTEMETRYQ DSGPKGPLWE DISSGMRRLG YNRSAKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYYH QLDALYRSKA LASSSSGPGA
601: APALPPPPPP PQRPDQQAAA AAPPVTVVLA PVPLSQTGPH GNGNGNGNGC AGRGSSDNGG GGSGGMQKQQ ASNGGVAAAR FSAVDGAGGN GVATNKREEG
701: IVRKEEAVAA ETRPQPVSMN DSYVDSDSSM DDDEEDDFYD DDDEGDVGDG GNNKMQYEIQ FQQQHQHVQP QQQQNQSGGG VRPNASGSAG AGAGPAATTS
801: GSFLTMVHH
001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM
Arabidopsis Description
AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.