CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70307	Soybean	nucleus	87.99	90.48
KRH35148	Soybean	cytosol, mitochondrion, nucleus	21.75	68.02
KRH35147	Soybean	nucleus	29.87	64.56
KRG91651	Soybean	nucleus	65.75	64.29
CDY45957	Canola	nucleus	38.31	48.36
Bra003702.1-P	Field mustard	nucleus	35.55	47.82
CDY13568	Canola	nucleus	37.34	46.65
Bra008286.1-P	Field mustard	nucleus	39.12	46.62
KRH70308	Soybean	nucleus	47.73	46.59
KRH08699	Soybean	nucleus	47.24	44.43
CDY48546	Canola	nucleus	30.19	44.29
Bra015715.1-P	Field mustard	nucleus	40.91	43.9
AT1G76890.2	Thale cress	nucleus	40.75	43.65
KRG91649	Soybean	nucleus	44.97	43.01
KRH35149	Soybean	nucleus	45.62	42.13
KRH38181	Soybean	nucleus	30.36	38.16
KRH53849	Soybean	nucleus	30.36	37.63
KRH64101	Soybean	nucleus	30.19	37.2
KRH36613	Soybean	nucleus	17.05	31.07
KRH11595	Soybean	nucleus	16.56	30.18
KXG40355	Sorghum	nucleus, plastid	34.74	27.4
Zm00001d032453_P001	Maize	nucleus	34.58	27.17
Zm00001d013849_P001	Maize	nucleus	34.25	27.16
GSMUA_Achr8P11770_001	Banana	nucleus	7.47	26.9
EER91374	Sorghum	nucleus	34.58	26.39
TraesCS5A01G558200.1	Wheat	nucleus, plastid	33.44	26.24
TraesCS1A01G176700.2	Wheat	nucleus	34.74	26.19
TraesCS1D01G162400.1	Wheat	nucleus, plastid	34.58	26.07
HORVU1Hr1G046940.4	Barley	nucleus	34.9	25.97
TraesCS1B01G203300.2	Wheat	nucleus	34.25	25.92
TraesCSU01G029700.1	Wheat	nucleus	33.12	25.92
Zm00001d027335_P001	Maize	nucleus	33.77	25.71
TraesCS4B01G396900.1	Wheat	nucleus	28.73	25.58
HORVU4Hr1G089120.1	Barley	nucleus, plastid	32.63	25.35
KRG96146	Soybean	nucleus	23.54	25.09
KRH32666	Soybean	nucleus	23.86	24.75
KRH67857	Soybean	nucleus	23.21	24.57
KRH34074	Soybean	nucleus	21.59	22.89
KRH34733	Soybean	nucleus	19.32	21.96
KRG92051	Soybean	nucleus	18.99	21.79
KRG96954	Soybean	nucleus	20.29	20.83
KRH68714	Soybean	nucleus	20.29	20.06
KRG92655	Soybean	nucleus	21.59	19.82

Protein Annotations

EMBL:ACUP02010198	EnsemblPlants:KRH08698	EnsemblPlantsGene:GLYMA_16G167500	EntrezGene:100776819	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF50	PFAM:PF13837	PFscan:PS50090
ProteinID:KRH08698	ProteinID:KRH08698.1	SEG:seg	SMART:SM00717	UniParc:UPI000296BE78	UniProt:I1MP72
MapMan:15.5.20	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:32707122..32710495

Molecular Weight (calculated)

69483.7 Da

IEP (calculated)

6.235

GRAVY (calculated)

-1.054

Length

616 amino acids

Sequence
(BLAST)

001: MQLGDSSVLE ISSHTQPEMA VTAVVSPPEE VAHDGSDNSG DGGSGDGGGG EMIGMDLDAN SGEGNEGNNK MSFGGNRWPR QETLALLKIR SDMDTVFRDS
101: SLKGPLWEEV SRKLAELGYQ RSAKKCKEKF ENVYKYNKRT KDNKSGKSHG KTYKFFDQLQ ALENQFTTVS YPPKPQPTST LATTNPLTLP TRPSDHGNKV
201: ISYVTTFPST NPTLISPSPQ TNTTTTTTTT TSTTNPRDSS RPQTNNNNNS VTHSLPNMNT SFSTTTASTS SSTASDEDLE ERYRRKRKWK DYFRRLTRKV
301: LLKQEEMQKK FLEAMDQRER ERVAQQDNWR MQEMARINRE HEILVQERST AAAKDATVIA LLQKMYGQQN PTPQVEVEPP PQQKQTIPQS QPPILMPNNN
401: FEVKKINNGH SVTSTTTGTV ATATTTTSPV NSSSSRWPKA EVHALIRIRT SLETKYQENG PKAPLWEDIS IAMQRLGYNR SAKRCKEKWE NINKYFKRVR
501: ESSKERREDS KTCPYFHELE ALYKEKSKSS KNPFGIFQNM KPNEMMLMMT EPLMVQPEQQ WRPPPQSLEE GVGMENASEE YHENEENGGD DDDNIEEDGD
601: SVEDEGANPC EIATNN

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.