CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96954	Soybean	nucleus	87.32	90.67
KRH34074	Soybean	nucleus	56.5	60.59
KRG92655	Soybean	nucleus	57.95	53.8
VIT_14s0030g01860.t01	Wine grape	plastid	48.15	48.78
CDY05590	Canola	nucleus	36.92	38.46
Bra020607.1-P	Field mustard	nucleus	36.92	37.83
CDX86194	Canola	nucleus	36.76	37.54
CDY52502	Canola	nucleus	35.96	37.52
Bra009994.1-P	Field mustard	nucleus	36.6	37.38
CDY52482	Canola	nucleus	36.28	37.29
AT5G28300.1	Thale cress	nucleus	36.76	37.0
KRH35148	Soybean	cytosol, mitochondrion, nucleus	9.31	29.44
KRH53849	Soybean	nucleus	21.19	26.56
KRH38181	Soybean	nucleus	20.71	26.33
KRH64101	Soybean	nucleus	20.71	25.8
KRH36613	Soybean	nucleus	13.48	24.85
KRH11595	Soybean	nucleus	13.48	24.85
KRH70308	Soybean	nucleus	24.24	23.93
KRH08699	Soybean	nucleus	24.56	23.36
Os02t0104500-01	Rice	nucleus	17.98	23.33
KRG91649	Soybean	nucleus	23.76	22.98
GSMUA_Achr7P04610_001	Banana	nucleus	16.85	21.69
KRH35149	Soybean	nucleus	22.95	21.44
KRH70307	Soybean	nucleus	19.9	20.7
KRG91651	Soybean	nucleus	20.87	20.63
KRH08698	Soybean	nucleus	20.06	20.29
KRH32666	Soybean	nucleus	19.26	20.2
GSMUA_AchrUn_...	Banana	nucleus	6.9	20.09
Zm00001d014938_P001	Maize	nucleus	21.19	19.88
KRH67857	Soybean	nucleus	18.46	19.76
KRG96146	Soybean	nucleus	18.3	19.72
PGSC0003DMT400080676	Potato	nucleus	14.45	19.31
GSMUA_Achr1P24120_001	Banana	nucleus	20.39	18.98
EES06104	Sorghum	nucleus	21.67	18.24
HORVU0Hr1G014900.1	Barley	nucleus	20.55	18.1
KRH34733	Soybean	nucleus	15.73	18.08
Zm00001d054080_P001	Maize	nucleus	20.71	18.07
KRG92051	Soybean	nucleus	15.57	18.06
TraesCS6A01G013200.2	Wheat	nucleus	21.03	17.4
TraesCS6D01G016300.1	Wheat	nucleus	21.03	17.31
TraesCS6B01G020100.1	Wheat	nucleus	21.03	17.21
GSMUA_AchrUn_...	Banana	nucleus	11.72	15.56
KRH35147	Soybean	nucleus	6.74	14.74
Solyc08g061910.2.1	Tomato	nucleus	5.62	14.0
GSMUA_AchrUn_...	Banana	nucleus	14.61	13.04

Protein Annotations

EMBL:ACUP02002123	EnsemblPlants:KRH68714	EnsemblPlantsGene:GLYMA_03G246000	EntrezGene:100795995	Gene3D:1.10.10.60	InterPro:IPR017877
InterPro:Myb-like_dom	PANTHER:PTHR21654	PANTHER:PTHR21654:SF22	PFAM:PF13837	PFscan:PS50090	ProteinID:KRH68713.1
ProteinID:KRH68714	ProteinID:KRH68714.1	SEG:seg	UniParc:UPI00023C117E	UniProt:K7KGV2	MapMan:15.5.20

Description

hypothetical protein

Coordinates

chr3:+:44312611..44316351

Molecular Weight (calculated)

70689.1 Da

IEP (calculated)

6.794

GRAVY (calculated)

-1.013

Length

623 amino acids

Sequence
(BLAST)

001: MFDGAPDQFH QFIAPTRTTL PLHMSFPLHH HASSTPPPNT FLPFDPYNPS SHHHHLPSLQ TNHLLHPLHP PTTIISPTPT HKHEQDKVAP INNNNDVEIQ
101: RDQRQLPDQL TDSWTNDEVL ALFRIRSSME NWFPELTWDH VSRKLAEVGF KKSAEKCKEK FEDESRYFDN INNNYGKNNF RFLISELEEL CQNPDPGGGG
201: DNHNGVEKTH PLGGDNMGHH ALEENKRDIE ITTATKQCDD IVVEKSNISK VRKRKRRDRF EMFKGFCESV VNKMMAQQEE IHNRLLEDML KRDQEKFARE
301: EAWKKQELDR MNKELEIMAQ EQAIAGGRHA TIIEFLKKCA TTTTSLSSPP SQNAKYYKTN GSNLPNCALH PQNPNDPSNE DNNLEPTPSP KMIQNHDQAT
401: LLGAENPSAS DTLLQVPSSS NSSPTPGHNP SSSLNSHNNI IPLDSNSVST YKPTSTTPMA STSENSKDDI GRRWPRDEVL ALINLRCTSL SSSNNNNNNN
501: EEKEGNNKGP LWERISQGMS ELGYKRSAKR CKEKWENINK YFRKTKDNVN KKRSLNSRTC PYFHQLSCLY GQGKIVPQSD EREGKNYLNP TANSGDQVPP
601: DHDQVQADES YQVGSAALVQ YAC

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.