Factsheet for GSMUA_Achr1P24120_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	50.37	71.86
GSMUA_Achr7P04610_001	Banana	nucleus	48.28	66.74
GSMUA_AchrUn_...	Banana	nucleus	16.74	52.34
Os02t0104500-01	Rice	nucleus	30.64	42.71
Zm00001d014938_P001	Maize	nucleus	41.41	41.72
TraesCS6B01G020100.1	Wheat	nucleus	45.44	39.95
Zm00001d054080_P001	Maize	nucleus	42.6	39.92
TraesCS6D01G016300.1	Wheat	nucleus	44.69	39.5
EES06104	Sorghum	nucleus	43.5	39.32
TraesCS6A01G013200.2	Wheat	nucleus	44.25	39.31
HORVU0Hr1G014900.1	Barley	nucleus	41.26	39.04
VIT_04s0008g01850.t01	Wine grape	nucleus	37.07	38.45
PGSC0003DMT400080676	Potato	nucleus	18.09	25.97
GSMUA_Achr8P11760_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	21.23	25.49
GSMUA_Achr9P18800_001	Banana	nucleus	20.78	24.09
GSMUA_Achr11P...	Banana	nucleus	22.72	23.79
GSMUA_Achr2P11910_001	Banana	nucleus	22.12	23.12
GSMUA_Achr1P04100_001	Banana	nucleus	21.82	22.78
GSMUA_Achr4P24780_001	Banana	nucleus	22.42	22.42
GSMUA_AchrUn_...	Banana	nucleus	23.32	22.35
GSMUA_Achr2P00580_001	Banana	nucleus	22.57	21.54
GSMUA_Achr5P19950_001	Banana	nucleus, plastid	21.08	21.36
KRH34074	Soybean	nucleus	18.54	21.34
CDY52502	Canola	nucleus	18.83	21.11
CDY05590	Canola	nucleus	18.68	20.9
GSMUA_Achr4P29130_001	Banana	nucleus	21.82	20.89
AT5G28300.1	Thale cress	nucleus	19.28	20.84
CDY52482	Canola	nucleus	18.83	20.79
Bra020607.1-P	Field mustard	nucleus	18.83	20.72
KRG96954	Soybean	nucleus	18.54	20.67
Bra009994.1-P	Field mustard	nucleus	18.83	20.66
CDX86194	Canola	nucleus	18.83	20.66
KRH68714	Soybean	nucleus	18.98	20.39
GSMUA_Achr8P07630_001	Banana	nucleus	11.51	19.35
KRG92655	Soybean	nucleus	18.68	18.63
Solyc08g061910.2.1	Tomato	nucleus	6.73	18.0
GSMUA_Achr8P11770_001	Banana	nucleus	3.29	12.87

Protein Annotations

EnsemblPlants:GSMUA_Achr1P24120_001	EnsemblPlants:GSMUA_Achr1T24120_001	EnsemblPlantsGene:GSMUA_Achr1G24120_001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
PANTHER:PTHR21654	PANTHER:PTHR21654:SF31	PFAM:PF13837	PFscan:PS50090	SEG:seg	UniParc:UPI000294E8BA
UniProt:M0S2L9	MapMan:15.5.20	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G24120_001]

Coordinates

chr1:+:18545584..18550801

Molecular Weight (calculated)

73592.7 Da

IEP (calculated)

6.215

GRAVY (calculated)

-0.883

Length

669 amino acids

Sequence
(BLAST)

001: MQSGYGGVSE IQKFMVDSCG SSLFSISSAN PTTVGAGAVD TPTTDIHSAA LHPLKYHPLP QPHQPQPQAS PPLPPHFSHF HSVSITQQLF HHPAHQFQLF
101: HPQQQYLEPR QLIPQHQLGL DHEPAPENSS SPTRIIPGSS SGGGPSFLTA AMSFKLSVND SSGGGGGGGN REGINDNDSI LQGDDGSESR LHHWQREDES
201: SIKELSWRPL DLDYINRNHK RCKDKEAETS NSKHCRKNKE GDETEDVQVA GGSNYKIFSE LEAIYNKPGG GANQTGSGSA LTGDEAPLLH ATTVAAPGPP
301: AADEEEEATA KKLSKGSGRR RRKWRQRQLS SVAAFFEDLV KQLMDHQEDL HRQFLDVMER REQQRISREE AWRKQQVAKS SREAATRAQE RALASSREAA
401: IISFIEKFTG ESLNLPCNLP FPSHMPDADA DKEDHTNTPN NLQIEPSSDT FNNGDPGSSK MSFNTSRWPK AEVQALIRVR SGLESRFQEP GLKGPLWEEV
501: SATMATMGYH RSAKRCKEKW ENINKYFRKT KERGKKRPQH SKTCPYFQQL DQLYSKSLNT NPITSTSSPN ATNVSTIAAA SGANEGQRKD NSELLDAIVV
601: PADHQSFRFS DMAALGFDFN SRGDDSDRAG GGGGGTAAEG PLEPRVSEDN NDEEDDDQGG EFPPTFYLL

Best Arabidopsis Sequence Match ( AT5G28300.1 )
(BLAST)

001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF

Arabidopsis Description

Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.