Factsheet for GSMUA_AchrUn_randomP03020_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	9.03	29.44
GSMUA_Achr7P04610_001	Banana	nucleus	18.91	27.27
Os02t0104500-01	Rice	nucleus	18.34	26.67
GSMUA_Achr8P11760_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.05	23.88
GSMUA_Achr1P24120_001	Banana	nucleus	22.35	23.32
VIT_04s0008g01850.t01	Wine grape	nucleus	18.77	20.31
GSMUA_Achr11P...	Banana	nucleus	18.19	19.87
GSMUA_Achr1P04100_001	Banana	nucleus	17.91	19.5
GSMUA_Achr9P18800_001	Banana	nucleus	16.05	19.41
Zm00001d014938_P001	Maize	nucleus	18.19	19.13
GSMUA_Achr4P24780_001	Banana	nucleus	17.91	18.68
GSMUA_Achr2P11910_001	Banana	nucleus	16.91	18.44
HORVU0Hr1G014900.1	Barley	nucleus	18.34	18.1
Zm00001d054080_P001	Maize	nucleus	18.48	18.07
GSMUA_Achr2P00580_001	Banana	nucleus	18.05	17.97
GSMUA_Achr5P19950_001	Banana	nucleus, plastid	16.76	17.73
EES06104	Sorghum	nucleus	18.34	17.3
PGSC0003DMT400080676	Potato	nucleus	11.46	17.17
TraesCS6A01G013200.2	Wheat	nucleus	18.48	17.13
GSMUA_Achr4P29130_001	Banana	nucleus	17.05	17.02
TraesCS6D01G016300.1	Wheat	nucleus	18.34	16.91
TraesCS6B01G020100.1	Wheat	nucleus	18.34	16.82
KRH34074	Soybean	nucleus	13.04	15.66
KRG96954	Soybean	nucleus	13.18	15.33
CDY52482	Canola	nucleus	13.04	15.02
AT5G28300.1	Thale cress	nucleus	13.18	14.86
CDX86194	Canola	nucleus	12.89	14.75
Bra009994.1-P	Field mustard	nucleus	12.89	14.75
CDY05590	Canola	nucleus	12.61	14.72
KRH68714	Soybean	nucleus	13.04	14.61
GSMUA_AchrUn_...	Banana	nucleus	9.74	14.5
Bra020607.1-P	Field mustard	nucleus	12.61	14.47
CDY52502	Canola	nucleus	12.32	14.41
KRG92655	Soybean	nucleus	13.18	13.71
GSMUA_Achr8P07630_001	Banana	nucleus	6.45	11.31
GSMUA_Achr8P11770_001	Banana	nucleus	1.0	4.09
Solyc08g061910.2.1	Tomato	nucleus	1.0	2.8

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP03020_001	EnsemblPlants:GSMUA_AchrUn_randomT03020_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG03020_001	Gene3D:1.10.10.60	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR017877	InterPro:Myb-like_dom	PANTHER:PTHR21654	PANTHER:PTHR21654:SF31	PFAM:PF13837
PFscan:PS50090	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295CEA1	UniProt:M0U5W4	MapMan:15.5.20
MapMan:24.2.1.5	:	:	:	:	:

Description

Putative Auxin-induced protein 5NG4 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03020_001]

Coordinates

chrchrUn_random:+:14581102..14591248

Molecular Weight (calculated)

78119.5 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.104

Length

698 amino acids

Sequence
(BLAST)

001: MDHQEGLHMK FLEVMERREQ ERTSREEAWR KQEAAKSSRE AAARAQERAL ASSREAAIIS FLEKITGVSL NLPSKLQSPD VDDDKEENVN NIGNLQIETF
101: NNNGNPDSNK VMFNTSRWPK AEVQALIRVR SGLESRFREP GLKGPLWEEV SGTLATMGYH RTAKRCKEKW ENINKYFRKT KESGRKRPQH SKTCPYFQQL
201: DQLYSKSLTN KPHPSSASPT TNVATVHASG ASNDQGKDNS ELLDAIVVPA DHQSFKFSDM GGLSSSIIIA TAIAASEERR RLLKEVTRHL QYKELSHLLH
301: LVQFIDKDVE RGVVGGSRHH HSSLQRAIIY GVYMVISNHF RAAGLDPLFL PIFAGLATAF VFHPFGLHLR EKWSAKLSAI LIAQFVLHGF GGLVLFSKSI
401: YMMLGMKKTS PAIASAMSNL APGLIFIVAV CLRLEKFEVE YWYSRAKVGE TFVCFSGSVA MSCFRSNSNS PNLKSKEPKL LMKHLDKDTY SDWILGCFYL
501: LAAVVLQLQV ISFQIKLLLL ETSSSSCVIT SVLASALTAL MQVLTQGKIH VGDTAIYTWF LVMIGSIASR LVFCFSSLQM WCLNRKGPPL VAIFSPIQTL
601: CAASYSFSHP LRADHKGLLC GQILMFAGLC IVLWAKSHES CSVFDVNDGS RQPVDDVETP LVWSRDAHEW LCSGNMVKCT NNIAAIKRRR QFQFLLAL

Best Arabidopsis Sequence Match ( AT1G76890.2 )
(BLAST)

001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT

Arabidopsis Description

GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.