Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52482 | Canola | nucleus | 78.84 | 80.53 |
| CDX86194 | Canola | nucleus | 79.16 | 80.33 |
| Bra009994.1-P | Field mustard | nucleus | 79.0 | 80.16 |
| CDY05590 | Canola | nucleus | 77.06 | 79.77 |
| Bra020607.1-P | Field mustard | nucleus | 77.54 | 78.95 |
| CDY52502 | Canola | nucleus | 76.09 | 78.89 |
| KRH34074 | Soybean | nucleus | 38.13 | 40.62 |
| VIT_14s0030g01860.t01 | Wine grape | plastid | 38.93 | 39.19 |
| KRG96954 | Soybean | nucleus | 36.19 | 37.33 |
| KRH68714 | Soybean | nucleus | 37.0 | 36.76 |
| KRG92655 | Soybean | nucleus | 39.42 | 36.36 |
| AT5G47660.1 | Thale cress | nucleus | 15.67 | 24.37 |
| AT1G76890.2 | Thale cress | nucleus | 21.65 | 23.3 |
| AT1G76880.1 | Thale cress | nucleus | 21.81 | 22.39 |
| Os02t0104500-01 | Rice | nucleus | 16.48 | 21.25 |
| AT1G33240.1 | Thale cress | nucleus | 22.46 | 20.78 |
| GSMUA_Achr7P04610_001 | Banana | nucleus | 15.99 | 20.45 |
| PGSC0003DMT400080676 | Potato | nucleus | 15.35 | 20.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.95 | 20.09 |
| GSMUA_Achr1P24120_001 | Banana | nucleus | 20.84 | 19.28 |
| Zm00001d014938_P001 | Maize | nucleus | 20.03 | 18.67 |
| AT5G03680.1 | Thale cress | nucleus | 17.77 | 18.61 |
| HORVU0Hr1G014900.1 | Barley | nucleus | 19.87 | 17.4 |
| EES06104 | Sorghum | nucleus | 20.52 | 17.16 |
| TraesCS6B01G020100.1 | Wheat | nucleus | 21.0 | 17.08 |
| TraesCS6D01G016300.1 | Wheat | nucleus | 20.68 | 16.91 |
| TraesCS6A01G013200.2 | Wheat | nucleus | 20.52 | 16.87 |
| Zm00001d054080_P001 | Maize | nucleus | 19.39 | 16.81 |
| AT3G10000.1 | Thale cress | nucleus | 12.92 | 16.63 |
| Solyc08g061910.2.1 | Tomato | nucleus | 6.3 | 15.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 11.31 | 14.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.86 | 13.18 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:832914 | ProteinID:AED93787.1 | EMBL:AF296835 | EMBL:AF386963 |
| EMBL:AK227285 | ArrayExpress:AT5G28300 | EnsemblPlantsGene:AT5G28300 | RefSeq:AT5G28300 | TAIR:AT5G28300 | RefSeq:AT5G28300-TAIR-G |
| EnsemblPlants:AT5G28300.1 | TAIR:AT5G28300.1 | EMBL:AY081484 | EMBL:BT000461 | EMBL:BT008389 | ncoils:Coil |
| GO:GO:0001158 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005516 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045893 | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_568506.2 | PFAM:PF13837 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50090 | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF22 | UniProt:Q8H181 | UniParc:UPI00000ADAD0 | SEG:seg |
Description
Trihelix transcription factor GTL2 [Source:UniProtKB/Swiss-Prot;Acc:Q8H181]
Coordinates
chr5:-:10292279..10295283
Molecular Weight (calculated)
71283.9 Da
IEP (calculated)
7.237
GRAVY (calculated)
-1.137
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGGVPEQI HRFIASPPPP PPLPPHQPAA ERSLPFPVSF SSFNTNHQPQ HMLSLDSRKI IHHHHHHHHH DIKDGGATTG EWIGQTDHDD SDNHHQHHHH
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF
101: HPWCSDEVLA LLRFRSTVEN WFPEFTWEHT SRKLAEVGFK RSPQECKEKF EEEERRYFNS NNNNNNNTND HQHIGNYNNK GNNYRIFSEV EEFYHHGHDN
201: EHVSSEVGDN QNKRTNLVEG KGNVGETVQD LMAEDKLRDQ DQGQVEEASM ENQRNSIEVG KVGNVEDDAK SSSSSSLMMI MKEKKRKKRK KEKERFGVLK
301: GFCEGLVRNM IAQQEEMHKK LLEDMVKKEE EKIAREEAWK KQEIERVNKE VEIRAQEQAM ASDRNTNIIK FISKFTDHDL DVVQNPTSPS QDSSSLALRK
401: TQGRRKFQTS SSLLPQTLTP HNLLTIDKSL EPFSTKTLKP KNQNPKPPKS DDKSDLGKRW PKDEVLALIN IRRSISNMND DDHKDENSLS TSSKAVPLWE
501: RISKKMLEIG YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQPP TGTTATTATT ATSARDLDTR PEENRVGSQD PDISVPMHVD
601: GDGAGDKSNV QFSGFDLEF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.