Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70293 | Canola | nucleus | 83.08 | 85.99 |
| Bra009518.1-P | Field mustard | nucleus | 82.91 | 85.81 |
| CDY10364 | Canola | nucleus | 73.6 | 85.8 |
| CDY11266 | Canola | nucleus | 73.6 | 85.29 |
| Bra005777.1-P | Field mustard | nucleus | 82.57 | 85.17 |
| CDX80883 | Canola | nucleus | 73.1 | 84.71 |
| AT3G10000.1 | Thale cress | nucleus | 51.95 | 63.83 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 45.85 | 48.48 |
| KRG96146 | Soybean | nucleus | 45.01 | 46.02 |
| KRH67857 | Soybean | nucleus | 44.33 | 45.02 |
| Solyc09g009250.2.1 | Tomato | nucleus | 40.78 | 44.38 |
| PGSC0003DMT400072404 | Potato | nucleus | 30.63 | 43.61 |
| PGSC0003DMT400007016 | Potato | nucleus | 39.76 | 43.36 |
| GSMUA_Achr8P07630_001 | Banana | nucleus | 28.76 | 42.71 |
| KRH32666 | Soybean | nucleus | 41.62 | 41.41 |
| AT1G76880.1 | Thale cress | nucleus | 25.38 | 24.88 |
| AT1G76890.2 | Thale cress | nucleus | 23.35 | 24.0 |
| AT1G33240.1 | Thale cress | nucleus | 23.69 | 20.93 |
| Zm00001d032453_P001 | Maize | nucleus | 27.58 | 20.79 |
| AT5G47660.1 | Thale cress | nucleus | 13.71 | 20.35 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 28.26 | 20.17 |
| Zm00001d013849_P001 | Maize | nucleus | 26.4 | 20.08 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 27.58 | 19.95 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 27.58 | 19.95 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 27.41 | 19.9 |
| EER91374 | Sorghum | nucleus | 27.07 | 19.83 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 26.23 | 19.55 |
| KXG40355 | Sorghum | nucleus, plastid | 25.72 | 19.46 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 25.38 | 19.11 |
| TraesCSU01G029700.1 | Wheat | nucleus | 25.38 | 19.06 |
| Zm00001d027335_P001 | Maize | nucleus | 26.06 | 19.04 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 21.66 | 18.5 |
| AT5G28300.1 | Thale cress | nucleus | 18.61 | 17.77 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:831757 | ProteinID:AED90641.1 | ArrayExpress:AT5G03680 | EnsemblPlantsGene:AT5G03680 |
| RefSeq:AT5G03680 | TAIR:AT5G03680 | RefSeq:AT5G03680-TAIR-G | EnsemblPlants:AT5G03680.1 | TAIR:AT5G03680.1 | EMBL:AY555728 |
| Unigene:At.50425 | ProteinID:CAB82933.1 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0040007 | GO:GO:0040008 |
| GO:GO:0042803 | GO:GO:0046621 | GO:GO:0048441 | GO:GO:0048442 | GO:GO:0048498 | GO:GO:0090428 |
| InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_195988.1 | PFAM:PF13837 | PO:PO:0000037 | PO:PO:0000229 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0005021 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50090 | PANTHER:PTHR21654 |
| PANTHER:PTHR21654:SF5 | Symbol:PTL | UniProt:Q9LZS0 | UniParc:UPI00000A70D7 | SEG:seg | : |
Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
Coordinates
chr5:+:957611..961047
Molecular Weight (calculated)
66642.5 Da
IEP (calculated)
7.083
GRAVY (calculated)
-0.942
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.