Factsheet for Bra005777.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021482.1-P	nucleus
Bra039146.1-P	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	Bra021482.1-P	AT3G01090.2	25697797
AT5G03680.1	Bra039146.1-P	AT3G01090.2	25697797
AT5G03680.1	Bra021482.1-P	AT3G01090.2	25697797
AT5G03680.1	Bra039146.1-P	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11266	Canola	nucleus	88.31	99.22
CDX80883	Canola	nucleus	83.25	93.53
Bra028824.1-P	Field mustard	nucleus	85.34	82.88
AT5G03680.1	Thale cress	nucleus	85.17	82.57
Bra009518.1-P	Field mustard	nucleus	81.68	81.96
KRG96146	Soybean	nucleus	45.72	45.33
VIT_08s0007g03820.t01	Wine grape	nucleus	43.98	45.08
KRH67857	Soybean	nucleus	45.03	44.33
Solyc09g009250.2.1	Tomato	nucleus	41.19	43.46
PGSC0003DMT400072404	Potato	nucleus	31.41	43.37
PGSC0003DMT400007016	Potato	nucleus	40.84	43.17
GSMUA_Achr8P07630_001	Banana	nucleus	28.45	40.95
KRH32666	Soybean	nucleus	42.41	40.91
Bra003702.1-P	Field mustard	nucleus	20.59	25.76
Bra015716.1-P	Field mustard	nucleus	24.43	25.41
Bra008285.1-P	Field mustard	nucleus	24.43	25.23
Bra008286.1-P	Field mustard	nucleus	21.99	24.37
Bra015715.1-P	Field mustard	nucleus	22.86	22.82
Bra003703.1-P	Field mustard	nucleus	24.26	22.68
Bra040010.1-P	Field mustard	nucleus	23.56	21.7
Bra036731.1-P	Field mustard	nucleus	23.56	21.43
Zm00001d032453_P001	Maize	nucleus	27.92	20.41
Zm00001d013849_P001	Maize	nucleus	27.23	20.08
HORVU1Hr1G046940.4	Barley	nucleus	28.62	19.81
TraesCS1A01G176700.2	Wheat	nucleus	27.92	19.58
TraesCS1D01G162400.1	Wheat	nucleus, plastid	27.92	19.58
TraesCS1B01G203300.2	Wheat	nucleus	27.75	19.53
EER91374	Sorghum	nucleus	27.4	19.45
HORVU4Hr1G089120.1	Barley	nucleus, plastid	26.35	19.04
KXG40355	Sorghum	nucleus, plastid	25.83	18.95
TraesCS5A01G558200.1	Wheat	nucleus, plastid	25.83	18.85
TraesCSU01G029700.1	Wheat	nucleus	25.83	18.81
Zm00001d027335_P001	Maize	nucleus	26.35	18.66
TraesCS4B01G396900.1	Wheat	nucleus	21.99	18.21
Bra022149.1-P	Field mustard	nucleus	12.22	18.09
Bra020607.1-P	Field mustard	nucleus	18.32	17.27
Bra024925.1-P	Field mustard	nucleus	9.77	17.13
Bra009994.1-P	Field mustard	nucleus	17.8	16.72

Protein Annotations

EnsemblPlants:Bra005777.1	EnsemblPlants:Bra005777.1-P	EnsemblPlantsGene:Bra005777	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837	PFscan:PS50090
SEG:seg	SMART:SM00717	UniParc:UPI000253FB86	UniProt:M4CNI9	MapMan:15.5.20	:

Description

AT5G03680 (E=3e-212) PTL | PTL (PETAL LOSS); transcription factor

Coordinates

chrA03:+:556048..558832

Molecular Weight (calculated)

64931.6 Da

IEP (calculated)

6.588

GRAVY (calculated)

-0.886

Length

573 amino acids

Sequence
(BLAST)

001: MEDHHTQYGI PELRQLMKGE GRTTTTASPS TSHFPSDFFG FNLAPAAPPP PPQHHRLHQF TINQEMGFLP HGIHGLGGGS STAGNNSNLN MSTSGGGVGF
101: SGFLDGGGLG GSGGTGRWPR QETLTLLEIR SRLDHKFKEA NQKGPFWDEV SRIMSEEYGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL
201: EALYGDSNNL VSFPNHNTQF MSHALGFHTQ NAMNITATTS NIHDVDSAHG LLHHQSLSIS NNYNSSELEL MTSSSEGNDS DSRRKKRSWK AKIKEFIDVN
301: MKRLIERQDI WLEKLTKVIE DKEEQRMMKE EEWRKSEAAR VEQVHLFWAK ERERMEARDV AVLEALQYLA GKTLIKPSCS SPEERINGNN EIQNNSENVS
401: LEGSGSCWNE QEIIKLMEIR TSMDTAFQEI LGECSDEFLW EEVSAKLIQL GFDHKSALSC KEKWECISNG MRKEKKQISK KRKDNSSSCG VYYPRTEENA
501: IYNNQESGYD DNDQHHHQMN EQDNVVSSTS NAAAGDLRGA MAASTNCFPF VMGDGDQNLW ESYSLRLSKG ENQ

Best Arabidopsis Sequence Match ( AT5G03680.1 )
(BLAST)

001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q

Arabidopsis Description

PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.