Factsheet for Bra040010.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93785	Canola	nucleus	94.69	100.0
Bra036731.1-P	Field mustard	nucleus	86.98	85.87
AT1G33240.1	Thale cress	nucleus	86.98	80.87
HORVU6Hr1G025060.1	Barley	nucleus	9.97	48.82
Bra015716.1-P	Field mustard	nucleus	35.53	40.11
Bra003702.1-P	Field mustard	nucleus	29.1	39.52
Bra008285.1-P	Field mustard	nucleus	34.73	38.92
Bra008286.1-P	Field mustard	nucleus	31.99	38.49
Os04t0541100-01	Rice	nucleus	36.5	37.52
TraesCS2D01G387100.1	Wheat	nucleus	44.37	37.05
Bra003703.1-P	Field mustard	nucleus	36.01	36.54
HORVU6Hr1G025090.1	Barley	cytosol, nucleus, plastid	10.61	36.46
OQU82045	Sorghum	nucleus, plastid	43.73	36.41
TraesCS2A01G389200.1	Wheat	nucleus	43.57	36.23
HORVU2Hr1G092650.3	Barley	nucleus	43.09	36.12
TraesCS2B01G407400.1	Wheat	nucleus	43.89	35.92
Bra015715.1-P	Field mustard	nucleus	33.12	35.89
HORVU6Hr1G061300.6	Barley	nucleus	35.85	35.23
Zm00001d002801_P001	Maize	nucleus	43.89	34.64
Zm00001d017420_P001	Maize	nucleus	37.14	34.38
Zm00001d025960_P002	Maize	nucleus	38.91	34.18
TraesCS6B01G284400.3	Wheat	nucleus, plastid	35.37	33.85
TraesCS6A01G240200.1	Wheat	nucleus	35.85	33.43
TraesCS6D01G222500.1	Wheat	nucleus	36.01	33.38
Os02t0648300-01	Rice	nucleus	23.63	33.33
Zm00001d051316_P002	Maize	nucleus	35.53	33.08
EES05815	Sorghum	nucleus	36.66	31.67
Bra022149.1-P	Field mustard	nucleus	18.01	28.94
Bra024925.1-P	Field mustard	nucleus	14.15	26.91
Bra009518.1-P	Field mustard	nucleus	21.86	23.82
Bra005777.1-P	Field mustard	nucleus	21.7	23.56
Bra020607.1-P	Field mustard	nucleus	22.99	23.52
Bra028824.1-P	Field mustard	nucleus	22.19	23.39
Bra009994.1-P	Field mustard	nucleus	22.67	23.11
Os10t0516500-01	Rice	cytosol, nucleus	8.68	22.13

Protein Annotations

EnsemblPlants:Bra040010.1	EnsemblPlants:Bra040010.1-P	EnsemblPlantsGene:Bra040010	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	ncoils:Coil	PANTHER:PTHR21654	PANTHER:PTHR21654:SF13	PFAM:PF13837	PFscan:PS50090
SEG:seg	SMART:SM00717	UniParc:UPI000253EB8F	UniProt:M4FFY6	MapMan:15.5.20	:

Description

AT1G33240 (E=3e-102) AT-GTL1, AT-GTL2 | AT-GTL1 (GT2-LIKE 1); DNA binding / transcription factor

Coordinates

chrScaffold000185:-:140799..143097

Molecular Weight (calculated)

69378.3 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.940

Length

622 amino acids

Sequence
(BLAST)

001: MEQGAGGGNE VVEEASPISS RPPANMEELM RFSAAADDGG GLGGSSSSSS GNRWPREETL ALLRIRSEMD STFRDATLKA PLWEHVSRKL LELGYKRSAK
101: KCKEKFENVQ KYYKRTKETR GGRHDGKAYK FFSQLEALNT TPPSSSLDAT PLSVANPIQP PPSSSHFPVF PLPQTQPHTV SFTPNVPPPP PPMGPTFPGA
201: TFSSHSSSTA SGMGSDDEDI MDVDQAGPSS RKRKRGNRGG GKMMELFDGL VRQVMQKQAA MQRSFLEALE KREQERLHRE EAWKRQEMSR LAREHEIMSQ
301: ERAASASRDA AIISLIQKIT GHTIQLPPSF SSQPSPPPPP AAKRPSSQPP QLQPIMAIPQ QQVLPPPPPQ PQQEVIMSSD QSSPSSSRWP KAEILALINL
401: RSGMEPRYQD NVPKGLLWEE ISSSMKRMGY NRNAKRCKEK WENINKYYKK VKESNKERPQ DAKTCPYFHR LDLLYRNKVL GTGGSSSASA LPHQDQISTV
501: QKQSPVSAVK PPQGVVTVGS ASSEEEEPRE ESPQGTEKPE DLVMKELMQH QQQDSMISEY EKIEESHNYN NMEEEEEEEE EEEMDEELDE DEKSAAYEVA
601: FQSPANRGGN GHTEPPFLTM VQ

Best Arabidopsis Sequence Match ( AT1G33240.1 )
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ

Arabidopsis Description

AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.