Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G240200.1 | Wheat | nucleus | 94.63 | 95.2 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 87.93 | 90.77 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 83.76 | 88.78 |
| Os02t0648300-01 | Rice | nucleus | 36.36 | 55.33 |
| Zm00001d017420_P001 | Maize | nucleus | 54.1 | 54.02 |
| Zm00001d051316_P002 | Maize | nucleus | 52.61 | 52.84 |
| EES05815 | Sorghum | nucleus | 55.59 | 51.81 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 44.71 | 40.27 |
| CDY62151 | Canola | nucleus | 32.04 | 39.45 |
| CDX85981 | Canola | nucleus | 21.31 | 39.18 |
| CDY71745 | Canola | nucleus | 32.79 | 38.46 |
| CDX93785 | Canola | nucleus | 33.08 | 37.69 |
| Bra040010.1-P | Field mustard | nucleus | 33.38 | 36.01 |
| CDY44964 | Canola | nucleus | 20.42 | 35.58 |
| Bra036731.1-P | Field mustard | nucleus | 33.38 | 35.56 |
| AT1G33240.1 | Thale cress | nucleus | 33.53 | 33.63 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 39.64 | 32.56 |
| CDX85980 | Canola | nucleus | 10.28 | 32.55 |
| TraesCS6D01G016300.1 | Wheat | nucleus | 23.84 | 21.14 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G222500.1 | EnsemblPlantsGene:TraesCS6D01G222500 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF21 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | TIGR:cd12203 | MapMan:15.5.20 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:313280972..313283920
Molecular Weight (calculated)
72090.2 Da
IEP (calculated)
4.954
GRAVY (calculated)
-0.788
Length
671 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHPEQGGAG YPYGPPLTGM APLLPQPASA TVPVSSIPSP RPPPMQPQPQ PAGTNFDQLP AARVSSIPSP TPSPMQPQPQ PAGTNFDQLP AAGPVSGGGS
101: GAVSFHDDEN TPVDAGSGRS AGDAGAGGSG SRWPREETVA LIRIRSEMDG AFRNAALKAP VWEEVSRKLA ELGYRRSAKK CKEKFENVDK YYRRTKEGRA
201: GRQDGKNYRF FAELEALHAA APQQNQPMAT AATILPDPRP LAMAPAYPGA VLPDLSLSSN SESESDDESD DEEDQADGGG GRSNESMMAL FEGMIKQITE
301: KQDATQRLFL ETLEKWEADR TAREEAWRRQ ELARISRERE QHARERAAAA ARDAALIAFL QRVGGSSVLP TPMPAHTAPH PDAPGASLQL VVAASEEGDR
401: RGGESSAGMS RWPKEEVHAL IQLRMEKDEH CQDMGAKGPL WEDISAGMRR IGYNRSSKRC KEKWENINKY FKKVKESNKR RPEDSKTCPY FHQLDAIYRK
501: KQSAVSNAAA GCSSTAFGNA VGAVNASASE QHNPWRELEG KISNDFDRRH SVGGGSSDAP PGDGEVAAAS TVLDAIATNK KSEDNVMAME SNIQSQQTEV
601: TATDETDSDD IEGNYSDDGD DDGDEDDKMK YTIEFQKHKE GGSGSAPAAP ATAATVVTSS APTGSTFLAV Q
101: GAVSFHDDEN TPVDAGSGRS AGDAGAGGSG SRWPREETVA LIRIRSEMDG AFRNAALKAP VWEEVSRKLA ELGYRRSAKK CKEKFENVDK YYRRTKEGRA
201: GRQDGKNYRF FAELEALHAA APQQNQPMAT AATILPDPRP LAMAPAYPGA VLPDLSLSSN SESESDDESD DEEDQADGGG GRSNESMMAL FEGMIKQITE
301: KQDATQRLFL ETLEKWEADR TAREEAWRRQ ELARISRERE QHARERAAAA ARDAALIAFL QRVGGSSVLP TPMPAHTAPH PDAPGASLQL VVAASEEGDR
401: RGGESSAGMS RWPKEEVHAL IQLRMEKDEH CQDMGAKGPL WEDISAGMRR IGYNRSSKRC KEKWENINKY FKKVKESNKR RPEDSKTCPY FHQLDAIYRK
501: KQSAVSNAAA GCSSTAFGNA VGAVNASASE QHNPWRELEG KISNDFDRRH SVGGGSSDAP PGDGEVAAAS TVLDAIATNK KSEDNVMAME SNIQSQQTEV
601: TATDETDSDD IEGNYSDDGD DDGDEDDKMK YTIEFQKHKE GGSGSAPAAP ATAATVVTSS APTGSTFLAV Q
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.