CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62151	Canola	nucleus	75.62	50.64
CDX93785	Canola	nucleus	80.55	49.92
CDY71745	Canola	nucleus	78.08	49.83
HORVU6Hr1G025060.1	Barley	nucleus	16.44	47.24
AT1G33240.1	Thale cress	nucleus	81.92	44.69
HORVU6Hr1G025090.1	Barley	cytosol, nucleus, plastid	17.53	35.36
CDY44964	Canola	nucleus	32.6	30.91
CDY45955	Canola	nucleus	34.79	28.86
CDX87564	Canola	nucleus	33.15	28.34
CDY45957	Canola	nucleus	34.52	25.82
CDY13568	Canola	nucleus	34.52	25.56
CDY65284	Canola	nucleus	36.44	24.01
CDX88320	Canola	nucleus	35.34	23.71
CDX68080	Canola	nucleus	36.44	22.97
CDY48545	Canola	nucleus, plastid	35.34	22.71
HORVU6Hr1G061300.6	Barley	nucleus	38.63	22.27
OQU82045	Sorghum	nucleus, plastid	45.21	22.09
TraesCS2D01G387100.1	Wheat	nucleus	44.93	22.01
Zm00001d017420_P001	Maize	nucleus	40.27	21.88
Zm00001d002801_P001	Maize	nucleus	46.58	21.57
TraesCS2A01G389200.1	Wheat	nucleus	43.84	21.39
TraesCS6D01G222500.1	Wheat	nucleus	39.18	21.31
Zm00001d051316_P002	Maize	nucleus	38.9	21.26
TraesCS6B01G284400.3	Wheat	nucleus, plastid	37.81	21.23
TraesCS2B01G407400.1	Wheat	nucleus	44.11	21.18
TraesCS6A01G240200.1	Wheat	nucleus	38.63	21.14
HORVU2Hr1G092650.3	Barley	nucleus	42.19	20.75
EES05815	Sorghum	nucleus	39.73	20.14
Zm00001d025960_P002	Maize	nucleus	38.9	20.06
CDY48546	Canola	nucleus	22.47	19.52
CDY04893	Canola	nucleus	26.85	19.33
CDX80883	Canola	nucleus	26.85	19.22
CDY10364	Canola	nucleus	26.58	19.13
CDY11266	Canola	nucleus	26.58	19.02
Os04t0541100-01	Rice	nucleus	31.23	18.84
CDX70293	Canola	nucleus	27.12	17.34
CDY44379	Canola	nucleus	27.95	17.32
CDY17716	Canola	nucleus	15.89	16.71
CDY28914	Canola	nucleus	16.44	15.5
CDY40550	Canola	nucleus	16.44	15.35
CDY05590	Canola	nucleus	24.66	15.05
CDY52502	Canola	nucleus	24.38	14.91
Os02t0648300-01	Rice	nucleus	17.81	14.74
CDY52482	Canola	nucleus	23.29	14.03
CDX86194	Canola	nucleus	23.29	13.93
CDX77787	Canola	nucleus	17.81	10.12
CDX85980	Canola	nucleus	2.74	4.72
CDX87563	Canola	nucleus	0.27	1.45
Os10t0516500-01	Rice	cytosol, nucleus	0.82	1.23
CDY45956	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX85981	EnsemblPlantsGene:GSBRNA2T00143851001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
PANTHER:PTHR21654	PANTHER:PTHR21654:SF13	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX85981	ProteinID:CDX85981.1
SEG:seg	SMART:SM00717	UniParc:UPI0004EE8C9C	MapMan:15.5.20	:	:

Description

BnaC06g21530D

Coordinates

chrLK031843:-:1320149..1322032

Molecular Weight (calculated)

39960.6 Da

IEP (calculated)

7.763

GRAVY (calculated)

-0.808

Length

365 amino acids

Sequence
(BLAST)

001: MSCGFKSGLV NLEMEQGAGG GNEVVEEASP ISSRPPANME ELMRFSAAAD EGGGLGGGGS SASSSSGNRW PREETLALLR IRSEMDSTFR DATLKAPLWE
101: HVSRKLLELG YKRSAKKCKE KFENVQKYYK RTKETRGGRH DGKAYKFFSQ LEALNTTPPS SSLDATPLSV ANPIQPPPSS SQFPVFPLPQ TLPHMTFSSH
201: SSSTASGMGS DDDDDEEDIM DVDQAGPSSR KRKRGNRGGG KMMELFDGLV RQVMQKQASM QRSFLEALEK REQERLHREE AWKRQEMSRL AREHEIMSQE
301: RAASASRDAA IISMIQKITG HTIQLAPSFS SQPTTSTTTN NGHSTTTGSS SSSSTTTTTR GDHEL

Best Arabidopsis Sequence Match ( AT1G33240.3 )
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM

Arabidopsis Description

AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.