Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G389200.1 | Wheat | nucleus | 96.38 | 95.99 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 94.36 | 92.5 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 86.98 | 87.33 |
| Os04t0541100-01 | Rice | nucleus | 64.56 | 79.5 |
| OQU82045 | Sorghum | nucleus, plastid | 71.81 | 71.62 |
| Zm00001d025960_P002 | Maize | nucleus | 64.16 | 67.51 |
| Zm00001d002801_P001 | Maize | nucleus | 70.07 | 66.24 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 9.8 | 57.48 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 13.42 | 55.25 |
| CDY62151 | Canola | nucleus | 33.56 | 45.87 |
| CDX93785 | Canola | nucleus | 36.24 | 45.84 |
| CDX85981 | Canola | nucleus | 22.01 | 44.93 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 40.27 | 44.71 |
| CDY71745 | Canola | nucleus | 34.23 | 44.58 |
| Bra040010.1-P | Field mustard | nucleus | 37.05 | 44.37 |
| Bra036731.1-P | Field mustard | nucleus | 36.64 | 43.33 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 47.52 | 43.33 |
| CDY44964 | Canola | nucleus | 21.88 | 42.34 |
| AT1G33240.1 | Thale cress | nucleus | 37.45 | 41.7 |
| CDX85980 | Canola | nucleus | 10.87 | 38.21 |
| TraesCS6D01G016300.1 | Wheat | nucleus | 22.68 | 22.32 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G387100.1 | EnsemblPlantsGene:TraesCS2D01G387100 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF81995 | TIGR:cd12203 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chr2D:-:492508841..492512011
Molecular Weight (calculated)
81010.5 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.960
Length
745 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQQQRHQG GASQYGAPAP ADMGPFSAQQ APGPVPLSVR PPPPTQQQQQ QNSQPSYDEL AGASGAGGSG FPDDDMLGDS GGHSGGGLGS GGNRWPREET
101: LALIRIRSEM DTTFRDATLK GPLWEEVSRK LAELGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY RFFQELEALH AATAAAQQQQ QDHLPLVVSA
201: APPPQMHAFS APQPMSAMPP PPGPMQPAPI SSAAPAPAVE PPQPPPVSLQ GLSFPSMSDS ESDDDDDSED DDMTAETGGS PDGLGKRKRG GGGSKKMMAF
301: FEGLMKQVVQ RQEEMQQRFL ETMEKREAER TAREEAWRRQ EVARLNREQE QLAQERAAAA SRDASIIAFL QRIGGQTVHV PPVVMPMPTP MQVQTPPPPK
401: KPRQHLPPPP PSQATQQPQP QPQPIPAAPL QQQPPPQPPQ HKETTREEVG TPRSAPAPTS AGLSLALVPV ATEQHVVEAA GLGGGESGGG PSSSRWPKTE
501: VHALIQLRMD MDNRYQENGP KGPLWEEISA GMRRLGYSRN SKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLEA IYRKKHNGGG SSGAAANNAV
601: VSVPAVAEHQ NLNRHEIEIE GKKINDTDKR NNGGVGAAQV PTSNGQTTPT MATFDLGVKK PEDAVRELNE QPHREFTTDE TDSDDMGDDY TDDGEDGEDD
701: GKMQYRIQFQ RPNPVGTNNA PPPPTTAATA APTSTPASSF LAMVQ
101: LALIRIRSEM DTTFRDATLK GPLWEEVSRK LAELGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY RFFQELEALH AATAAAQQQQ QDHLPLVVSA
201: APPPQMHAFS APQPMSAMPP PPGPMQPAPI SSAAPAPAVE PPQPPPVSLQ GLSFPSMSDS ESDDDDDSED DDMTAETGGS PDGLGKRKRG GGGSKKMMAF
301: FEGLMKQVVQ RQEEMQQRFL ETMEKREAER TAREEAWRRQ EVARLNREQE QLAQERAAAA SRDASIIAFL QRIGGQTVHV PPVVMPMPTP MQVQTPPPPK
401: KPRQHLPPPP PSQATQQPQP QPQPIPAAPL QQQPPPQPPQ HKETTREEVG TPRSAPAPTS AGLSLALVPV ATEQHVVEAA GLGGGESGGG PSSSRWPKTE
501: VHALIQLRMD MDNRYQENGP KGPLWEEISA GMRRLGYSRN SKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLEA IYRKKHNGGG SSGAAANNAV
601: VSVPAVAEHQ NLNRHEIEIE GKKINDTDKR NNGGVGAAQV PTSNGQTTPT MATFDLGVKK PEDAVRELNE QPHREFTTDE TDSDDMGDDY TDDGEDGEDD
701: GKMQYRIQFQ RPNPVGTNNA PPPPTTAATA APTSTPASSF LAMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.