Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G387100.1 | Wheat | nucleus | 92.5 | 94.36 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 91.58 | 93.05 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 84.47 | 86.52 |
| Os04t0541100-01 | Rice | nucleus | 63.16 | 79.34 |
| OQU82045 | Sorghum | nucleus, plastid | 70.0 | 71.22 |
| Zm00001d002801_P001 | Maize | nucleus | 68.55 | 66.12 |
| Zm00001d025960_P002 | Maize | nucleus | 61.45 | 65.96 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 9.34 | 55.91 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 12.89 | 54.14 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 39.08 | 45.69 |
| CDX93785 | Canola | nucleus | 35.13 | 45.33 |
| CDY62151 | Canola | nucleus | 32.37 | 45.14 |
| CDX85981 | Canola | nucleus | 21.18 | 44.11 |
| CDY71745 | Canola | nucleus | 33.16 | 44.06 |
| Bra040010.1-P | Field mustard | nucleus | 35.92 | 43.89 |
| Bra036731.1-P | Field mustard | nucleus | 35.26 | 42.54 |
| CDY44964 | Canola | nucleus | 21.32 | 42.08 |
| AT1G33240.1 | Thale cress | nucleus | 36.32 | 41.26 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 44.08 | 41.15 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 37.11 | 40.75 |
| CDX85980 | Canola | nucleus | 10.66 | 38.21 |
| TraesCS6B01G020100.1 | Wheat | nucleus | 22.11 | 22.08 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G407400.1 | EnsemblPlantsGene:TraesCS2B01G407400 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF81995 | TIGR:cd12203 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chr2B:-:578136636..578139743
Molecular Weight (calculated)
83092.3 Da
IEP (calculated)
6.616
GRAVY (calculated)
-0.870
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPFSAQPAP GPVPLSVRPP PTQQQQPQPS YEQELAAASG AGGSSFPDDD MLGDSGGHSA GGLGSGGNRW PREETLALIR IRSEMDTTFR DATLKGPLWE
101: EVSRKLAELG YKRSAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYRFFQE LEALHAATAA AQHQQQEHLP LVVSAAPPPQ MHAFSAPQPM SAMPPPPGPM
201: QPAPISSAAP APVVEPPHPL PVSLQGLSFP SMSDSESDDD DDSEDDDMTA ETGGSPDGLG KRKRGGGGSK KMMAFFEGLM KQVVQRQEEM QQRFLETMEK
301: REAERTEREE AWRRQEVARL NREQEQLAQE RAAAASRDAS IIAFLQRIGG QTVHVPPVVI PMPTPMQVQT PPPPKKPRQH LPPPPPSQAT QQPQPQPQPQ
401: PIPAAPLQQQ PPPQPPQHKE TTREEAGTPR SAPAPTSAGL SLALVPVATE QHVVEAAGLG GGESGGGPSS SRWPKTEVHA LIQLRMDMDN RYQENGPKGP
501: LWEEISAGMR RLGYSRNSKR CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHQLEAIYR KKHNGSGSSG AAANNAVVSV PAVAEHQNLN RHEIEIEGKK
601: INDTDKRNNG GVGAAQVPTS NGQTTPTTAT FDLGVKKVIA HTIFTLQPSV FELDQSRSRW MFLGWKLTGY ALAVKPEDAV RELNEQPHRE FTTDETDSDD
701: MGDDYTDDGE DGEDDGKMQY RIQFQRPNPV GTNNAPPPPT TAATAAPTST PASSFLAMVQ
101: EVSRKLAELG YKRSAKKCKE KFENVHKYYK RTKEGRAGRQ DGKSYRFFQE LEALHAATAA AQHQQQEHLP LVVSAAPPPQ MHAFSAPQPM SAMPPPPGPM
201: QPAPISSAAP APVVEPPHPL PVSLQGLSFP SMSDSESDDD DDSEDDDMTA ETGGSPDGLG KRKRGGGGSK KMMAFFEGLM KQVVQRQEEM QQRFLETMEK
301: REAERTEREE AWRRQEVARL NREQEQLAQE RAAAASRDAS IIAFLQRIGG QTVHVPPVVI PMPTPMQVQT PPPPKKPRQH LPPPPPSQAT QQPQPQPQPQ
401: PIPAAPLQQQ PPPQPPQHKE TTREEAGTPR SAPAPTSAGL SLALVPVATE QHVVEAAGLG GGESGGGPSS SRWPKTEVHA LIQLRMDMDN RYQENGPKGP
501: LWEEISAGMR RLGYSRNSKR CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHQLEAIYR KKHNGSGSSG AAANNAVVSV PAVAEHQNLN RHEIEIEGKK
601: INDTDKRNNG GVGAAQVPTS NGQTTPTTAT FDLGVKKVIA HTIFTLQPSV FELDQSRSRW MFLGWKLTGY ALAVKPEDAV RELNEQPHRE FTTDETDSDD
701: MGDDYTDDGE DGEDDGKMQY RIQFQRPNPV GTNNAPPPPT TAATAAPTST PASSFLAMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.