Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU82045 | Sorghum | nucleus, plastid | 84.01 | 88.62 |
| Zm00001d025960_P002 | Maize | nucleus | 75.89 | 84.46 |
| Os04t0541100-01 | Rice | nucleus | 60.03 | 78.18 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 66.24 | 70.07 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 65.99 | 69.52 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 66.12 | 68.55 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 63.58 | 67.52 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 8.63 | 53.54 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 11.68 | 50.83 |
| CDY62151 | Canola | nucleus | 32.74 | 47.34 |
| CDY71745 | Canola | nucleus | 33.88 | 46.68 |
| CDX85981 | Canola | nucleus | 21.57 | 46.58 |
| Zm00001d017420_P001 | Maize | nucleus | 39.59 | 46.43 |
| CDX93785 | Canola | nucleus | 33.63 | 44.99 |
| Zm00001d051316_P002 | Maize | nucleus | 37.82 | 44.61 |
| Bra036731.1-P | Field mustard | nucleus | 35.53 | 44.44 |
| Bra040010.1-P | Field mustard | nucleus | 34.64 | 43.89 |
| Zm00001d032453_P001 | Maize | nucleus | 43.27 | 43.49 |
| CDY44964 | Canola | nucleus | 21.07 | 43.12 |
| Zm00001d013849_P001 | Maize | nucleus | 41.75 | 42.34 |
| AT1G33240.1 | Thale cress | nucleus | 35.79 | 42.15 |
| Zm00001d027335_P001 | Maize | nucleus | 39.72 | 38.69 |
| CDX85980 | Canola | nucleus | 10.03 | 37.26 |
| Zm00001d014938_P001 | Maize | nucleus | 20.56 | 24.4 |
| Zm00001d054080_P001 | Maize | nucleus | 20.18 | 22.27 |
Protein Annotations
| EnsemblPlants:Zm00001d002801_P001 | EnsemblPlants:Zm00001d002801_T001 | EnsemblPlantsGene:Zm00001d002801 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF24 | PFAM:PF13837 | PFscan:PS50090 |
| ProteinID:ONM15387.1 | SEG:seg | SMART:SM00717 | UniParc:UPI000844F008 | UniProt:A0A1D6E4F1 | MapMan:15.5.20 |
Description
Trihelix-transcription factor 12GT-2-like 1
Coordinates
chr2:+:23082802..23086615
Molecular Weight (calculated)
84823.6 Da
IEP (calculated)
6.419
GRAVY (calculated)
-0.866
Length
788 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQHQGGGG GGGGGSQFGA PPPDMGPFSP TPAATGPMPL SSRPPSAQPQ QQPRTSYEEL APMVPGAAAA SGFDDETMGS GGGGGGSSGA SSNRWPREET
101: QALIRIRSEM DATFRDATLK GPLWEDVSRK LADLGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY RFFEELEALH AAAPQPPPQH LPAASTAPQL
201: HALAAPVSPT PQQQLPASSA APPLHAFPAP VSAPPPLSSM PLLTGPMQPA PISSAAPAPA PVDLLVAHQP LNLQGFSFSS MSDSESDDES EDDDMTAETG
301: GNQDRLGKRK RGDGGGSSSN KMMSFFEGLM QQVVDRQEEM QRRFLETMEK REAERTAREE AWRRQEVARL NREQEQLAQE RAAAASRDAA IIAFLQRIGG
401: QSVQPPATAV VVPMPAPVSV HTTPPKQPSR QQQQPPPPSP QAGQATPQSK PISAAPLQQQ PPQQQPKDTS QQDAGTPRSL PPASSQSLEL VPVAATEHHV
501: DSGLGGGDGG AASSSRWPKT EVHALIQLRM DLDMRYQETG PKGPLWEDIS SGMRRLGYNR SSKRCKEKWE NINKYYKKVK ESNKKRPEDS KTCPYFHQLE
601: AIYNRKHLRS LTTAATSSAA AAPRPAYPDQ LNPSRQEIEG KNINDDKRNN GGSGGGTQVP TSNGETATTT TTTTLVAFDA DTGMKKTDAR RLTGYVLAVK
701: PEDIVRELNE HPRREFTTED ETDSDDMGDE YTDDGEEGED DGKMQYRIQF QRPNPGGTNT APAPAAATTA APAVPTSAPT STFLAMVQ
101: QALIRIRSEM DATFRDATLK GPLWEDVSRK LADLGYKRSA KKCKEKFENV HKYYKRTKEG RAGRQDGKSY RFFEELEALH AAAPQPPPQH LPAASTAPQL
201: HALAAPVSPT PQQQLPASSA APPLHAFPAP VSAPPPLSSM PLLTGPMQPA PISSAAPAPA PVDLLVAHQP LNLQGFSFSS MSDSESDDES EDDDMTAETG
301: GNQDRLGKRK RGDGGGSSSN KMMSFFEGLM QQVVDRQEEM QRRFLETMEK REAERTAREE AWRRQEVARL NREQEQLAQE RAAAASRDAA IIAFLQRIGG
401: QSVQPPATAV VVPMPAPVSV HTTPPKQPSR QQQQPPPPSP QAGQATPQSK PISAAPLQQQ PPQQQPKDTS QQDAGTPRSL PPASSQSLEL VPVAATEHHV
501: DSGLGGGDGG AASSSRWPKT EVHALIQLRM DLDMRYQETG PKGPLWEDIS SGMRRLGYNR SSKRCKEKWE NINKYYKKVK ESNKKRPEDS KTCPYFHQLE
601: AIYNRKHLRS LTTAATSSAA AAPRPAYPDQ LNPSRQEIEG KNINDDKRNN GGSGGGTQVP TSNGETATTT TTTTLVAFDA DTGMKKTDAR RLTGYVLAVK
701: PEDIVRELNE HPRREFTTED ETDSDDMGDE YTDDGEEGED DGKMQYRIQF QRPNPGGTNT APAPAAATTA APAVPTSAPT STFLAMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.