Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051316_P002 | Maize | nucleus | 78.57 | 79.04 |
| Os02t0648300-01 | Rice | nucleus | 38.54 | 58.73 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 53.87 | 57.19 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 52.68 | 54.46 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 54.02 | 54.1 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 53.12 | 53.52 |
| CDY62151 | Canola | nucleus | 32.89 | 40.55 |
| CDX85981 | Canola | nucleus | 21.88 | 40.27 |
| Zm00001d002801_P001 | Maize | nucleus | 46.43 | 39.59 |
| CDY71745 | Canola | nucleus | 33.33 | 39.16 |
| Zm00001d025960_P002 | Maize | nucleus | 41.22 | 39.12 |
| CDX93785 | Canola | nucleus | 34.23 | 39.05 |
| Bra040010.1-P | Field mustard | nucleus | 34.38 | 37.14 |
| Bra036731.1-P | Field mustard | nucleus | 34.23 | 36.51 |
| CDY44964 | Canola | nucleus | 20.54 | 35.84 |
| Zm00001d032453_P001 | Maize | nucleus | 40.03 | 34.31 |
| AT1G33240.1 | Thale cress | nucleus | 34.08 | 34.23 |
| Zm00001d013849_P001 | Maize | nucleus | 38.84 | 33.59 |
| CDX85980 | Canola | nucleus | 10.27 | 32.55 |
| Zm00001d027335_P001 | Maize | nucleus | 38.24 | 31.77 |
| Zm00001d014938_P001 | Maize | nucleus | 22.77 | 23.04 |
| Zm00001d054080_P001 | Maize | nucleus | 21.88 | 20.59 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100279784 | MapMan:15.5.20 | ProteinID:AQK73132.1 | ProteinID:AQK73133.1 | UniProt:B7ZZY0 |
| EMBL:BT054872 | EMBL:BT067767 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | PFAM:PF13837 | PFscan:PS50090 |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF21 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000191727A |
| EnsemblPlantsGene:Zm00001d017420 | EnsemblPlants:Zm00001d017420_P001 | EnsemblPlants:Zm00001d017420_T001 | SEG:seg | : | : |
Description
Trihelix-transcription factor 20GT-2-like 1
Coordinates
chr5:-:195392064..195395934
Molecular Weight (calculated)
72816.4 Da
IEP (calculated)
6.191
GRAVY (calculated)
-0.865
Length
672 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHHHGGAGS PYMAPTTADT GMDPFSPTPA TRPAVSVTAI PPPPTMQLRP AGAGPSADFE ELPAGGAGAG AAASLQDDDM QMQADYGASA AGASGSGGNR
101: WPREETLALI RIRTEMDADF RNAPLKAPLW EDVARKLAGL GYHRSAKKCK EKFENVHKYY KRTKDAHAGR QDGKSYRFFS QLEALHAAAP QPQPPSGMTT
201: VQAGPHHPMA LAWTAGPTAL GPAAGAGLPD LSFSSMSGSE SEYDSDDDDD DDAGEEGLGR GEYHREMMAI FEGMMKQVTD KQDAMQRVFL ETLERWEAER
301: TAREEAWRRQ EVARMNRERE RLARERAAAA SRDAALIAFL QCVGGGQGQP VRLPPHSAGA SVVPAPPKPD CAPPSPRLDA AATSLQQLVP AQLKAVEALA
401: WAGGEGGGST SSRWPKEEVE ALIQVRNEKD EQYHDAGGKG PLWEDIAAGM RRIGYNRSAK RCKEKWENIN KYYKKVKESN KRRPEDSKTC PYFHQLDAMY
501: RKKHRGDRGR ITAAGPNMQD SPSQRELEGK SSNDVDIDNR KSDEQGNVHT SPVSGNRDTA PTTTRPPGDG AKNKTAEDNL KRTNVQLKQQ QHEFGTDETD
601: SDDDMARNHT AYTEEDDDEA KIKYKMDFQN PNMIGSSSNM SAPPPPAAAA ATTAAAPTTS AAPTSNTFLA VQ
101: WPREETLALI RIRTEMDADF RNAPLKAPLW EDVARKLAGL GYHRSAKKCK EKFENVHKYY KRTKDAHAGR QDGKSYRFFS QLEALHAAAP QPQPPSGMTT
201: VQAGPHHPMA LAWTAGPTAL GPAAGAGLPD LSFSSMSGSE SEYDSDDDDD DDAGEEGLGR GEYHREMMAI FEGMMKQVTD KQDAMQRVFL ETLERWEAER
301: TAREEAWRRQ EVARMNRERE RLARERAAAA SRDAALIAFL QCVGGGQGQP VRLPPHSAGA SVVPAPPKPD CAPPSPRLDA AATSLQQLVP AQLKAVEALA
401: WAGGEGGGST SSRWPKEEVE ALIQVRNEKD EQYHDAGGKG PLWEDIAAGM RRIGYNRSAK RCKEKWENIN KYYKKVKESN KRRPEDSKTC PYFHQLDAMY
501: RKKHRGDRGR ITAAGPNMQD SPSQRELEGK SSNDVDIDNR KSDEQGNVHT SPVSGNRDTA PTTTRPPGDG AKNKTAEDNL KRTNVQLKQQ QHEFGTDETD
601: SDDDMARNHT AYTEEDDDEA KIKYKMDFQN PNMIGSSSNM SAPPPPAAAA ATTAAAPTTS AAPTSNTFLA VQ
001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKVQTLLF LVKM
Arabidopsis Description
AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.