Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62151 | Canola | nucleus | 71.75 | 88.07 |
| CDX93785 | Canola | nucleus | 77.28 | 87.78 |
| CDY44964 | Canola | nucleus | 50.22 | 87.27 |
| CDY71745 | Canola | nucleus | 74.59 | 87.24 |
| Bra040010.1-P | Field mustard | nucleus | 80.87 | 86.98 |
| CDX85980 | Canola | nucleus | 27.06 | 85.38 |
| Bra036731.1-P | Field mustard | nucleus | 79.97 | 84.92 |
| CDX85981 | Canola | nucleus | 44.69 | 81.92 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 9.42 | 49.61 |
| Os04t0541100-01 | Rice | nucleus | 34.83 | 38.51 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 10.31 | 38.12 |
| TraesCS2D01G387100.1 | Wheat | nucleus | 41.7 | 37.45 |
| OQU82045 | Sorghum | nucleus, plastid | 41.7 | 37.35 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 41.11 | 37.06 |
| AT1G76890.2 | Thale cress | nucleus | 31.69 | 36.87 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 40.96 | 36.63 |
| TraesCS2B01G407400.1 | Wheat | nucleus | 41.26 | 36.32 |
| AT1G76880.1 | Thale cress | nucleus | 32.44 | 35.99 |
| Zm00001d002801_P001 | Maize | nucleus | 42.15 | 35.79 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 33.78 | 35.7 |
| Zm00001d025960_P002 | Maize | nucleus | 37.67 | 35.59 |
| TraesCS6B01G284400.3 | Wheat | nucleus, plastid | 33.33 | 34.31 |
| Zm00001d017420_P001 | Maize | nucleus | 34.23 | 34.08 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 33.78 | 33.88 |
| Os02t0648300-01 | Rice | nucleus | 22.27 | 33.79 |
| TraesCS6D01G222500.1 | Wheat | nucleus | 33.63 | 33.53 |
| Zm00001d051316_P002 | Maize | nucleus | 32.88 | 32.93 |
| EES05815 | Sorghum | nucleus | 34.08 | 31.67 |
| AT5G47660.1 | Thale cress | nucleus | 18.24 | 30.65 |
| AT5G03680.1 | Thale cress | nucleus | 20.93 | 23.69 |
| AT5G28300.1 | Thale cress | nucleus | 20.78 | 22.46 |
| AT3G10000.1 | Thale cress | nucleus | 15.99 | 22.25 |
| Os10t0516500-01 | Rice | cytosol, nucleus | 7.92 | 21.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:840218 | ProteinID:AEE31573.1 | Symbol:AT-GTL1 | ArrayExpress:AT1G33240 |
| EnsemblPlantsGene:AT1G33240 | RefSeq:AT1G33240 | TAIR:AT1G33240 | RefSeq:AT1G33240-TAIR-G | EnsemblPlants:AT1G33240.1 | TAIR:AT1G33240.1 |
| ncoils:Coil | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_174594.1 | PFAM:PF13837 | PO:PO:0000013 |
| PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000282 | PO:PO:0000293 | PO:PO:0000351 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004011 | PO:PO:0004507 |
| PO:PO:0006019 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50090 | PANTHER:PTHR21654 |
| PANTHER:PTHR21654:SF13 | InterPro:SANT/Myb | SMART:SM00717 | UniParc:UPI0000162F6C | SEG:seg | : |
Description
AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
Coordinates
chr1:-:12051377..12054753
Molecular Weight (calculated)
74216.9 Da
IEP (calculated)
5.853
GRAVY (calculated)
-0.949
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.