CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44964	Canola	nucleus	66.08	98.18
CDY62151	Canola	nucleus	89.86	94.31
Bra036731.1-P	Field mustard	nucleus	97.38	88.41
CDX85980	Canola	nucleus	31.47	84.91
CDX93785	Canola	nucleus	82.87	80.48
CDX85981	Canola	nucleus	49.83	78.08
AT1G33240.1	Thale cress	nucleus	87.24	74.59
HORVU6Hr1G025060.1	Barley	nucleus	10.31	46.46
CDY45955	Canola	nucleus	30.42	39.55
CDY45957	Canola	nucleus	33.57	39.34
CDY13568	Canola	nucleus	33.74	39.15
CDX88320	Canola	nucleus	36.54	38.42
CDY65284	Canola	nucleus	36.36	37.55
CDX68080	Canola	nucleus	37.24	36.79
HORVU6Hr1G025090.1	Barley	cytosol, nucleus, plastid	11.54	36.46
CDY48545	Canola	nucleus, plastid	36.19	36.44
Os04t0541100-01	Rice	nucleus	37.24	35.21
HORVU6Hr1G061300.6	Barley	nucleus	38.64	34.91
OQU82045	Sorghum	nucleus, plastid	45.45	34.81
CDY48546	Canola	nucleus	25.35	34.52
TraesCS2D01G387100.1	Wheat	nucleus	44.58	34.23
Zm00001d002801_P001	Maize	nucleus	46.68	33.88
TraesCS2A01G389200.1	Wheat	nucleus	44.06	33.69
HORVU2Hr1G092650.3	Barley	nucleus	43.53	33.56
Zm00001d017420_P001	Maize	nucleus	39.16	33.33
TraesCS6B01G284400.3	Wheat	nucleus, plastid	37.76	33.23
TraesCS2B01G407400.1	Wheat	nucleus	44.06	33.16
CDX87564	Canola	nucleus	24.65	33.02
TraesCS6D01G222500.1	Wheat	nucleus	38.46	32.79
Zm00001d025960_P002	Maize	nucleus	40.56	32.77
TraesCS6A01G240200.1	Wheat	nucleus	38.11	32.68
Os02t0648300-01	Rice	nucleus	25.0	32.43
Zm00001d051316_P002	Maize	nucleus	36.71	31.44
EES05815	Sorghum	nucleus	38.64	30.69
CDY28914	Canola	nucleus	18.18	26.87
CDY40550	Canola	nucleus	18.18	26.6
CDY05590	Canola	nucleus	24.3	23.24
CDY17716	Canola	nucleus	13.99	23.05
CDY52502	Canola	nucleus	23.95	22.95
CDX70293	Canola	nucleus	22.73	22.77
CDY52482	Canola	nucleus	23.6	22.28
CDY44379	Canola	nucleus	22.9	22.24
CDX86194	Canola	nucleus	23.6	22.13
CDY11266	Canola	nucleus	19.58	21.96
CDY10364	Canola	nucleus	19.41	21.89
CDX80883	Canola	nucleus	19.41	21.76
CDY04893	Canola	nucleus	18.53	20.91
Os10t0516500-01	Rice	cytosol, nucleus	8.57	20.08
CDX77787	Canola	nucleus	21.15	18.85
CDX87563	Canola	nucleus	1.57	13.04
CDY45956	Canola	cytosol	1.57	12.68

Protein Annotations

EnsemblPlants:CDY71745	EnsemblPlantsGene:GSBRNA2T00019975001	Gene3D:1.10.10.60	GO:A0A078JZE5	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR21654	PANTHER:PTHR21654:SF13	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY71745
ProteinID:CDY71745.1	SEG:seg	SMART:SM00717	UniParc:UPI0004EEFD80	UniProt:A0A078JZE5	MapMan:15.5.20

Description

BnaAnng38690DBnaAnng38690D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JZE5]

Coordinates

chrLK047278:-:128..2474

Molecular Weight (calculated)

64224.3 Da

IEP (calculated)

5.898

GRAVY (calculated)

-1.016

Length

572 amino acids

Sequence
(BLAST)

001: GGGGGNEVVE EASPISSRPP ANMEELMRFS AAADDGGGLG GGSSSSSSGN RWPREETLAL LRIRSEMDST FRDATLKAPL WEHVSRKLLE LGYKRNAKKC
101: KEKFENVQKY HKRTKETRGG RHEGKTYKFF SQLEALNTSA PLPPSSLDVT PLSVANPVQQ PSSQFPVFSL TQTPPPSSTA SGMGSDDDDD DDDDMDVDQA
201: GPSSHKRKRE NRGGKMMELF QGLVRQVMQK QAAMQRSFLE ALEKREQERL AREEAWKRQE MSRLAREHEI MTQERAASAS RDAAIISLIQ KITGHTIQLP
301: PSLSSSQPSP PPPPAKLLPP PPHQPPPQQQ QQEMIMSSDQ SLPSSSRWPK EEILALINLR SGMEPRYQDN VPKGLLWEEI SSSMKRMGYN RNAKRCKEKW
401: ENINKYYKKV KESNKKRPQD AKTCPYYHRL DLLYRSKVLG SGAGSSTSAL PQDQISNIQK QSPVSAMKPS QEGDVNVHQG EEPREETPQG AEKPEDLVMR
501: ELMQQKQQQE EDSMIGEYEK IEASHNYNME EEEMDEELDE DEKSAAYEIA FQSPANRGGN GHSEPPFLTM VQ

Best Arabidopsis Sequence Match ( AT1G33240.1 )
(BLAST)

001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ

Arabidopsis Description

AT-GTL1GT-2-like 1 [Source:TAIR;Acc:AT1G33240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.