Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G47660.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024925.1-P | Field mustard | nucleus | 93.95 | 99.69 |
| CDY28914 | Canola | nucleus | 68.01 | 60.98 |
| CDY40550 | Canola | nucleus | 68.59 | 60.87 |
| AT5G47660.1 | Thale cress | nucleus | 62.82 | 54.77 |
| CDX77787 | Canola | nucleus | 92.22 | 49.84 |
| VIT_00s0259g00210.t01 | Wine grape | nucleus | 15.85 | 26.07 |
| VIT_00s0956g00030.t01 | Wine grape | nucleus | 15.27 | 25.12 |
| KRH36613 | Soybean | nucleus | 21.61 | 22.19 |
| KRH11595 | Soybean | nucleus | 21.04 | 21.6 |
| Solyc11g012720.1.1 | Tomato | nucleus | 23.05 | 19.8 |
| PGSC0003DMT400034607 | Potato | nucleus | 21.33 | 19.02 |
| CDX85981 | Canola | nucleus | 16.71 | 15.89 |
| CDY44964 | Canola | nucleus | 17.58 | 15.84 |
| CDY45957 | Canola | nucleus | 21.9 | 15.57 |
| CDY13568 | Canola | nucleus | 21.9 | 15.42 |
| CDY45955 | Canola | nucleus | 19.31 | 15.23 |
| CDX93785 | Canola | nucleus | 25.36 | 14.94 |
| CDY62151 | Canola | nucleus | 23.34 | 14.86 |
| CDY65284 | Canola | nucleus | 22.77 | 14.26 |
| CDY71745 | Canola | nucleus | 23.05 | 13.99 |
| CDX88320 | Canola | nucleus | 21.61 | 13.79 |
| CDY48546 | Canola | nucleus | 16.14 | 13.33 |
| CDX68080 | Canola | nucleus | 22.19 | 13.3 |
| CDY48545 | Canola | nucleus, plastid | 20.46 | 12.5 |
| CDX87564 | Canola | nucleus | 15.27 | 12.41 |
| CDY52502 | Canola | nucleus | 20.75 | 12.06 |
| CDY05590 | Canola | nucleus | 20.17 | 11.71 |
| CDX86194 | Canola | nucleus | 20.46 | 11.64 |
| CDY52482 | Canola | nucleus | 20.17 | 11.55 |
| CDX70293 | Canola | nucleus | 17.29 | 10.51 |
| CDX80883 | Canola | nucleus | 14.99 | 10.2 |
| CDY44379 | Canola | nucleus | 16.43 | 9.68 |
| CDY10364 | Canola | nucleus | 13.83 | 9.47 |
| CDY11266 | Canola | nucleus | 13.83 | 9.41 |
| CDY04893 | Canola | nucleus | 13.54 | 9.27 |
| CDX85980 | Canola | nucleus | 4.61 | 7.55 |
| CDY45956 | Canola | cytosol | 0.0 | 0.0 |
| CDX87563 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY17716 | EnsemblPlantsGene:GSBRNA2T00001941001 | Gene3D:1.10.10.60 | ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF7 |
| ProteinID:CDY17716 | ProteinID:CDY17716.1 | SEG:seg | UniParc:UPI0004EDBD7F | UniProt:A0A078FXF9 | MapMan:15.5.20 |
Description
BnaA06g35350DBnaA06g35350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXF9]
Coordinates
chrLK032076:-:707346..708976
Molecular Weight (calculated)
40054.6 Da
IEP (calculated)
8.479
GRAVY (calculated)
-0.899
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLAGNCRK RPADDFAEDV DPFGSSEWMY RSRSLRTQGN DDALATLADL ASPPQKQKPI RCVVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA
101: PWDEVEMEVR GRVSRRDGVS LSSSADSDSD SFQGGLKGKR KRKTREKMDH FVEKLVGSMM KRQEKMHNQL INVMEKMEHE RTLSEEAWRQ QEIERMKQNE
201: EAQMREMSHS SSIIPFIKSV IGEEEDIEMP NLTIPLPKQS AHQRQRDVKF VFPSGRRWPH EEVQALIDSR SQVEEKTGFH RVAIWDDVSA KMKERGKKTQ
301: PEHRKTRSYF EKLGKLYKTN SVVEKEEWRG GGGSSVRLRF TFFFVRV
101: PWDEVEMEVR GRVSRRDGVS LSSSADSDSD SFQGGLKGKR KRKTREKMDH FVEKLVGSMM KRQEKMHNQL INVMEKMEHE RTLSEEAWRQ QEIERMKQNE
201: EAQMREMSHS SSIIPFIKSV IGEEEDIEMP NLTIPLPKQS AHQRQRDVKF VFPSGRRWPH EEVQALIDSR SQVEEKTGFH RVAIWDDVSA KMKERGKKTQ
301: PEHRKTRSYF EKLGKLYKTN SVVEKEEWRG GGGSSVRLRF TFFFVRV
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FGJ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.