Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45955 | Canola | nucleus | 61.12 | 59.32 |
| CDX88320 | Canola | nucleus | 74.47 | 58.46 |
| CDY65284 | Canola | nucleus | 65.11 | 50.18 |
| CDX68080 | Canola | nucleus | 65.57 | 48.36 |
| CDY48545 | Canola | nucleus, plastid | 63.93 | 48.06 |
| AT1G76880.1 | Thale cress | nucleus | 65.11 | 46.1 |
| CDX85981 | Canola | nucleus | 28.34 | 33.15 |
| KRH70308 | Soybean | nucleus | 48.71 | 32.96 |
| CDY45957 | Canola | nucleus | 36.77 | 32.17 |
| CDY13568 | Canola | nucleus | 36.3 | 31.44 |
| KRH08699 | Soybean | nucleus | 47.07 | 30.69 |
| KRG91649 | Soybean | nucleus | 45.43 | 30.12 |
| KRH35149 | Soybean | nucleus | 45.67 | 29.24 |
| CDY62151 | Canola | nucleus | 33.02 | 25.87 |
| CDY48546 | Canola | nucleus | 24.82 | 25.24 |
| GSMUA_Achr8P11770_001 | Banana | nucleus | 10.07 | 25.15 |
| CDY71745 | Canola | nucleus | 33.02 | 24.65 |
| CDX93785 | Canola | nucleus | 33.96 | 24.62 |
| CDX80883 | Canola | nucleus | 24.59 | 20.59 |
| CDY11266 | Canola | nucleus | 24.36 | 20.39 |
| CDY10364 | Canola | nucleus | 23.89 | 20.12 |
| CDY04893 | Canola | nucleus | 23.18 | 19.53 |
| Zm00001d013849_P001 | Maize | nucleus | 35.36 | 19.43 |
| Zm00001d032453_P001 | Maize | nucleus | 35.36 | 19.26 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 36.77 | 19.22 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 36.77 | 19.22 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 36.53 | 19.16 |
| CDX70293 | Canola | nucleus | 25.53 | 19.09 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 36.53 | 18.84 |
| EER91374 | Sorghum | nucleus | 35.36 | 18.71 |
| CDY44379 | Canola | nucleus | 25.53 | 18.51 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 33.72 | 18.34 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 33.96 | 18.29 |
| TraesCSU01G029700.1 | Wheat | nucleus | 33.49 | 18.17 |
| KXG40355 | Sorghum | nucleus, plastid | 31.15 | 17.03 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 27.4 | 16.91 |
| CDY44964 | Canola | nucleus | 14.99 | 16.62 |
| Zm00001d027335_P001 | Maize | nucleus | 30.45 | 16.07 |
| CDY17716 | Canola | nucleus | 12.41 | 15.27 |
| CDY28914 | Canola | nucleus | 13.58 | 14.99 |
| CDY40550 | Canola | nucleus | 13.35 | 14.58 |
| CDY52502 | Canola | nucleus | 18.97 | 13.57 |
| CDY05590 | Canola | nucleus | 18.74 | 13.38 |
| CDX86194 | Canola | nucleus | 18.74 | 13.11 |
| CDY52482 | Canola | nucleus | 18.5 | 13.04 |
| CDX87563 | Canola | nucleus | 1.64 | 10.14 |
| CDX77787 | Canola | nucleus | 14.99 | 9.97 |
| CDY45956 | Canola | cytosol | 1.64 | 9.86 |
| CDX85980 | Canola | nucleus | 3.28 | 6.6 |
Protein Annotations
| EnsemblPlants:CDX87564 | EnsemblPlantsGene:GSBRNA2T00146565001 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF19 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDX87564 | ProteinID:CDX87564.1 |
| SEG:seg | UniParc:UPI0004EF3081 | MapMan:15.5.20 | : | : | : |
Description
BnaA07g33090D
Coordinates
chrLK031850:-:1238216..1240200
Molecular Weight (calculated)
47878.9 Da
IEP (calculated)
8.766
GRAVY (calculated)
-0.951
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGGGTTTT TSAPAEAPPP PQSNDAAAAT EAAAAAATVG AFEVSEEMND RGGFGANRWP RQETVALLKI RSDMGIAFRD ASAKGPLWEE VSRKMGELGY
101: IRNAKKCKEK FENVYKYHKR TKEGRTGKSE GKTYRFFDQL EALETHHQHQ PQPPLRPHNN NSSMFSTPPP VTTTIIPPTT TPSFPNISGD FMSDNSTSSS
201: SSYSTSSDVD IGGGGGRNKK KRKRKWKEFF ERLMKQVVDK QEELQRQFLE AVEKRERERM AREESWRAQE IARINREREI LAQERSMSAA KDAAVMAFLQ
301: KFSEKPNPQV TTAAATANAA NLRHCKNRQW RSDHDNSGVC FLLAVAESGD RGVDKAEDES RFKVSRERTK RTIVGRDISG DEEARIQQEL KEMQREVGEH
401: KQILQESEGE QQEAPSRLQD LSLLPPA
101: IRNAKKCKEK FENVYKYHKR TKEGRTGKSE GKTYRFFDQL EALETHHQHQ PQPPLRPHNN NSSMFSTPPP VTTTIIPPTT TPSFPNISGD FMSDNSTSSS
201: SSYSTSSDVD IGGGGGRNKK KRKRKWKEFF ERLMKQVVDK QEELQRQFLE AVEKRERERM AREESWRAQE IARINREREI LAQERSMSAA KDAAVMAFLQ
301: KFSEKPNPQV TTAAATANAA NLRHCKNRQW RSDHDNSGVC FLLAVAESGD RGVDKAEDES RFKVSRERTK RTIVGRDISG DEEARIQQEL KEMQREVGEH
401: KQILQESEGE QQEAPSRLQD LSLLPPA
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.