Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G081310.4 | nucleus |
| HORVU3Hr1G069190.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G176700.2 | Wheat | nucleus | 92.03 | 93.27 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 91.79 | 93.02 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 91.3 | 92.87 |
| Zm00001d032453_P001 | Maize | nucleus | 66.3 | 70.03 |
| Zm00001d013849_P001 | Maize | nucleus | 63.28 | 67.44 |
| EER91374 | Sorghum | nucleus | 65.34 | 67.04 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 36.47 | 54.22 |
| GSMUA_Achr11P... | Banana | nucleus | 41.67 | 53.99 |
| HORVU6Hr1G025060.1 | Barley | nucleus | 7.85 | 51.18 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 40.34 | 49.93 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 38.65 | 49.92 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 34.66 | 49.74 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 46.26 | 48.3 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 37.08 | 47.97 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 38.04 | 47.73 |
| CDY45955 | Canola | nucleus | 24.64 | 46.36 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 38.53 | 45.64 |
| Bra015716.1-P | Field mustard | nucleus | 29.83 | 44.83 |
| HORVU2Hr1G092650.3 | Barley | nucleus | 40.1 | 44.74 |
| CDX88320 | Canola | nucleus | 29.35 | 44.67 |
| CDY13568 | Canola | nucleus | 26.57 | 44.62 |
| VIT_04s0044g00510.t01 | Wine grape | nucleus | 27.42 | 44.51 |
| CDY45957 | Canola | nucleus | 26.09 | 44.26 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 10.51 | 44.16 |
| CDY65284 | Canola | nucleus | 28.99 | 43.32 |
| HORVU6Hr1G025090.1 | Barley | cytosol, nucleus, plastid | 9.42 | 43.09 |
| Bra003702.1-P | Field mustard | nucleus | 23.79 | 43.01 |
| Bra008285.1-P | Field mustard | nucleus | 28.74 | 42.88 |
| Bra008286.1-P | Field mustard | nucleus | 26.45 | 42.36 |
| KRG91649 | Soybean | nucleus | 32.73 | 42.08 |
| HORVU6Hr1G061300.6 | Barley | nucleus | 32.13 | 42.02 |
| AT1G76880.1 | Thale cress | nucleus | 30.31 | 41.63 |
| CDY48545 | Canola | nucleus, plastid | 28.5 | 41.55 |
| CDX68080 | Canola | nucleus | 28.99 | 41.45 |
| KRH35149 | Soybean | nucleus | 33.09 | 41.08 |
| KRH70308 | Soybean | nucleus | 31.04 | 40.73 |
| Bra015715.1-P | Field mustard | nucleus | 28.14 | 40.59 |
| KRH08699 | Soybean | nucleus | 32.0 | 40.46 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 34.18 | 40.37 |
| AT1G76890.2 | Thale cress | nucleus | 28.02 | 40.35 |
| CDY48546 | Canola | nucleus | 20.29 | 40.0 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 31.16 | 39.94 |
| Bra003703.1-P | Field mustard | nucleus | 29.23 | 39.48 |
| Solyc11g005380.1.1 | Tomato | nucleus | 23.55 | 39.39 |
| KRH53849 | Soybean | nucleus | 23.55 | 39.24 |
| PGSC0003DMT400061942 | Potato | nucleus | 29.71 | 39.17 |
| PGSC0003DMT400010112 | Potato | nucleus | 23.43 | 38.57 |
| Solyc04g071360.2.1 | Tomato | nucleus | 30.07 | 38.07 |
| Solyc12g056510.1.1 | Tomato | nucleus | 29.83 | 37.94 |
| KRH38181 | Soybean | nucleus | 22.34 | 37.76 |
| KRH64101 | Soybean | nucleus | 22.34 | 37.0 |
| CDX87564 | Canola | nucleus | 18.84 | 36.53 |
| KRH70307 | Soybean | nucleus | 25.97 | 35.89 |
| KRG91651 | Soybean | nucleus | 27.29 | 35.87 |
| KRH08698 | Soybean | nucleus | 25.97 | 34.9 |
| KRH35147 | Soybean | nucleus | 10.99 | 31.93 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 20.77 | 30.66 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 20.17 | 29.87 |
| KRG96146 | Soybean | nucleus | 20.77 | 29.76 |
| Solyc09g009250.2.1 | Tomato | nucleus | 18.96 | 28.91 |
| KRH67857 | Soybean | nucleus | 20.29 | 28.87 |
| PGSC0003DMT400007016 | Potato | nucleus | 18.84 | 28.78 |
| CDX70293 | Canola | nucleus | 19.81 | 28.72 |
| Bra005777.1-P | Field mustard | nucleus | 19.81 | 28.62 |
| Bra009518.1-P | Field mustard | nucleus | 19.69 | 28.55 |
| CDX80883 | Canola | nucleus | 17.51 | 28.43 |
| AT5G03680.1 | Thale cress | nucleus | 20.17 | 28.26 |
| CDY11266 | Canola | nucleus | 17.39 | 28.24 |
| PGSC0003DMT400072404 | Potato | nucleus | 13.89 | 27.71 |
| CDY44379 | Canola | nucleus | 19.69 | 27.67 |
| Bra028824.1-P | Field mustard | nucleus | 19.69 | 27.63 |
| CDY10364 | Canola | nucleus | 16.79 | 27.42 |
| KRH32666 | Soybean | nucleus | 19.08 | 26.6 |
| CDY04893 | Canola | nucleus | 16.18 | 26.43 |
| AT3G10000.1 | Thale cress | nucleus | 14.73 | 25.36 |
| KRH34733 | Soybean | nucleus | 16.43 | 25.09 |
| KRG92051 | Soybean | nucleus | 15.94 | 24.58 |
| HORVU0Hr1G014900.1 | Barley | nucleus | 19.57 | 22.91 |
| CDY45956 | Canola | cytosol | 1.21 | 14.08 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G046940.4 | EnsemblPlantsGene:HORVU1Hr1G046940 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| ncoils:Coil | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg |
| SMART:SM00717 | UniParc:UPI000B46D40F | UniProt:A0A287FEZ5 | MapMan:15.5.20 | : | : |
Description
No Description!
Coordinates
chrchr1H:-:345350553..345356060
Molecular Weight (calculated)
88306.5 Da
IEP (calculated)
6.479
GRAVY (calculated)
-0.861
Length
828 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQQQQGGG PGQQFGLHPP EMPPFSPSRS TGQQRISMAE APSPISSRPP APGPPQQQQQ LNNELAGAGA VGFDEEALAA AAAGEEGLGG GAGGNRWPRQ
101: ETLALLKIRS DMDAAFRDAT FKGPLWEEVS RKLAEEGYRR NAKKCKEKFE NVHKYYKRTK DSRAGRNDGK AYRFFRQLEA LHGTPGATPA PMASAPPPAT
201: AVGVPGVVGP TAVRPLAEPP PLGASAAATA GLPTPVVVGN MSFSTSNTEE YSDEDDSSDD EGTDDMGGGA DERGKRKRTS EGGAAAATGG EAGSGKMMRF
301: FEGLMKQVME RQEAMQQRFL EAIEKREQDR MIREEAWRRQ EMARLAREQE ILAQERAMAA TRDAAVLSFI QKITGQTIPM PSIAAQAITF MPPPPPSQPH
401: ASPIAYSAAP VPPPPSSSQP PATHSQPQPS PRQHKPPTMP PVTPQPHKSP APATPQLQQQ APAVNSSCMD IVVTPSEAPH DSSGYDGSGG GSGPASSRWP
501: KTEVHALIQL RSNLDMRYQE AGPKGPLWEE ISAGMRRMGY NRSSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LEALYRNKAA LSSPSGAGSP
601: LSLPPPAEHA NAAPQDRIEA FTVAAPISQT SPQQHAVAPV GVAKTDASNA GNGNSNGGNA SEGVSGGVQR VASNGGSRFV FSEAGGNKAA KKLEGIMKET
701: TTMEQRQPQP QPQPQPQPQA AQQALLNSYN RTGGGGADSD NMDEDDEDED DYEDEDEEDD LDGNKTQYKI QFQGQQQHQN QHQQHHHNVV RPNATSSSGG
801: GNPPGAAAAP SAPAPATTTA GSFLGMVQ
101: ETLALLKIRS DMDAAFRDAT FKGPLWEEVS RKLAEEGYRR NAKKCKEKFE NVHKYYKRTK DSRAGRNDGK AYRFFRQLEA LHGTPGATPA PMASAPPPAT
201: AVGVPGVVGP TAVRPLAEPP PLGASAAATA GLPTPVVVGN MSFSTSNTEE YSDEDDSSDD EGTDDMGGGA DERGKRKRTS EGGAAAATGG EAGSGKMMRF
301: FEGLMKQVME RQEAMQQRFL EAIEKREQDR MIREEAWRRQ EMARLAREQE ILAQERAMAA TRDAAVLSFI QKITGQTIPM PSIAAQAITF MPPPPPSQPH
401: ASPIAYSAAP VPPPPSSSQP PATHSQPQPS PRQHKPPTMP PVTPQPHKSP APATPQLQQQ APAVNSSCMD IVVTPSEAPH DSSGYDGSGG GSGPASSRWP
501: KTEVHALIQL RSNLDMRYQE AGPKGPLWEE ISAGMRRMGY NRSSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LEALYRNKAA LSSPSGAGSP
601: LSLPPPAEHA NAAPQDRIEA FTVAAPISQT SPQQHAVAPV GVAKTDASNA GNGNSNGGNA SEGVSGGVQR VASNGGSRFV FSEAGGNKAA KKLEGIMKET
701: TTMEQRQPQP QPQPQPQPQA AQQALLNSYN RTGGGGADSD NMDEDDEDED DYEDEDEEDD LDGNKTQYKI QFQGQQQHQN QHQQHHHNVV RPNATSSSGG
801: GNPPGAAAAP SAPAPATTTA GSFLGMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.