Factsheet for VIT_04s0044g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53849	Soybean	nucleus	52.55	53.92
KRH38181	Soybean	nucleus	51.57	53.67
KRH64101	Soybean	nucleus	51.37	52.4
Solyc11g005380.1.1	Tomato	nucleus	48.04	49.49
PGSC0003DMT400010112	Potato	nucleus	48.43	49.11
VIT_18s0072g00670.t01	Wine grape	nucleus	51.96	41.02
VIT_00s0956g00030.t01	Wine grape	nucleus	16.47	39.81
VIT_00s0259g00210.t01	Wine grape	nucleus	16.27	39.34
VIT_02s0025g03220.t01	Wine grape	nucleus	45.1	31.34
Zm00001d013849_P001	Maize	nucleus	44.51	29.21
Zm00001d032453_P001	Maize	nucleus	44.9	29.21
TraesCS1D01G162400.1	Wheat	nucleus, plastid	44.9	28.03
EER91374	Sorghum	nucleus	44.31	28.0
TraesCS1A01G176700.2	Wheat	nucleus	44.51	27.78
TraesCS1B01G203300.2	Wheat	nucleus	44.12	27.64
HORVU1Hr1G046940.4	Barley	nucleus	44.51	27.42
KXG40355	Sorghum	nucleus, plastid	41.37	27.02
VIT_13s0074g00400.t01	Wine grape	nucleus	29.02	26.38
GSMUA_Achr8P11770_001	Banana	nucleus	8.82	26.32
HORVU4Hr1G089120.1	Barley	nucleus, plastid	40.59	26.1
TraesCS5A01G558200.1	Wheat	nucleus, plastid	40.0	25.99
VIT_08s0007g03820.t01	Wine grape	nucleus	28.43	25.94
TraesCSU01G029700.1	Wheat	nucleus	39.61	25.67
TraesCS4B01G396900.1	Wheat	nucleus	34.71	25.58
Zm00001d027335_P001	Maize	nucleus	40.39	25.46
VIT_14s0030g01860.t01	Wine grape	plastid	29.22	24.23
VIT_04s0008g01850.t01	Wine grape	nucleus	27.84	22.02

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100247259	wikigene:100247259	MapMan:15.5.20	ProteinID:CCB60454	ProteinID:CCB60454.1
ncoils:Coil	UniProt:F6I0I8	EMBL:FN596506	InterPro:IPR017877	EntrezGene:LOC100247259	wikigene:LOC100247259
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR21654	PANTHER:PTHR21654:SF14	InterPro:SANT/Myb
SMART:SM00717	UniParc:UPI00015CC11A	ArrayExpress:VIT_04s0044g00510	EnsemblPlantsGene:VIT_04s0044g00510	EnsemblPlants:VIT_04s0044g00510.t01	unigene:Vvi.16933
RefSeq:XP_002276933	RefSeq:XP_002276933.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:21315800..21318291

Molecular Weight (calculated)

57908.3 Da

IEP (calculated)

4.762

GRAVY (calculated)

-1.059

Length

510 amino acids

Sequence
(BLAST)

001: MLGISDFPES SGTASGGREG EDGGGGAVPT GCEEEERVRG EESDRNFAGN RWPREETLAL LKIRSDMDVV FRDSSLKAPL WEEVSRKLGE LGYHRNAKKC
101: KEKFENIFKY HKRTKEGRSN RQNGKNYRFF EQLEALDNHP LMPPPSPVKY ETSTPMAASM PQTNPIDVTN VSQGINAVPC SIQKPAVDCV AASTSTTSSS
201: GKESEGSRKK KRKWGVFFEK LMKEVIEKQE NLQRKFIEAI EKCEQDRIAR EEAWKLQELD RIKREHEILV QERSIAAAKD AAVLAFLQKI AEQAGPVQLP
301: ENPSSEKVFE KQDNSNGENS IQMSSSRWPK AEVEALIRLR TNFDMQYQES GPKGPLWEEI SLAMRKIGYE RSAKRCKEKW ENINKYFKRV RDSNKRRPED
401: SKTCPYFHQL DALYKEKTKK VENPDNNSGY NLKPEDILMQ MMGQSEQRPQ SESVTEEGGS ENVNANQEEE EEEEEEEEDG DEEGGDGDED DEADGYQIVA
501: NNTSSMAIMG

Best Arabidopsis Sequence Match ( AT1G76880.1 )
(BLAST)

001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL

Arabidopsis Description

Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.