Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005108_P003 | nucleus |
| Zm00001d010811_P002 | nucleus |
| Zm00001d038745_P002 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91374 | Sorghum | nucleus | 90.94 | 88.35 |
| Zm00001d013849_P001 | Maize | nucleus | 87.12 | 87.9 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 69.52 | 66.71 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 69.26 | 66.46 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 70.03 | 66.3 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 68.62 | 66.09 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 39.16 | 55.12 |
| GSMUA_Achr11P... | Banana | nucleus | 43.49 | 53.36 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 41.58 | 50.86 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 42.35 | 49.63 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 36.48 | 49.57 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 39.8 | 48.75 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 40.18 | 47.73 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 42.09 | 47.21 |
| Zm00001d027335_P001 | Maize | nucleus | 48.21 | 46.72 |
| CDY45955 | Canola | nucleus | 25.26 | 45.0 |
| VIT_04s0044g00510.t01 | Wine grape | nucleus | 29.21 | 44.9 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 11.22 | 44.67 |
| Bra015716.1-P | Field mustard | nucleus | 30.99 | 44.1 |
| CDX88320 | Canola | nucleus | 30.23 | 43.57 |
| Zm00001d025960_P002 | Maize | nucleus | 39.16 | 43.36 |
| Zm00001d002801_P001 | Maize | nucleus | 43.49 | 43.27 |
| CDY13568 | Canola | nucleus | 27.04 | 43.0 |
| CDY45957 | Canola | nucleus | 26.66 | 42.83 |
| Bra008285.1-P | Field mustard | nucleus | 30.1 | 42.52 |
| CDY65284 | Canola | nucleus | 29.97 | 42.42 |
| KRG91649 | Soybean | nucleus | 34.57 | 42.08 |
| Bra003702.1-P | Field mustard | nucleus | 24.36 | 41.7 |
| CDX68080 | Canola | nucleus | 30.61 | 41.45 |
| KRH35149 | Soybean | nucleus | 35.2 | 41.38 |
| Bra008286.1-P | Field mustard | nucleus | 27.17 | 41.2 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 33.8 | 41.02 |
| CDY48545 | Canola | nucleus, plastid | 29.59 | 40.85 |
| AT1G76880.1 | Thale cress | nucleus | 31.38 | 40.8 |
| KRH08699 | Soybean | nucleus | 33.93 | 40.61 |
| KRH70308 | Soybean | nucleus | 32.65 | 40.57 |
| Solyc11g005380.1.1 | Tomato | nucleus | 25.38 | 40.2 |
| Zm00001d017420_P001 | Maize | nucleus | 34.31 | 40.03 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 35.33 | 39.52 |
| KRH53849 | Soybean | nucleus | 25.0 | 39.44 |
| PGSC0003DMT400010112 | Potato | nucleus | 25.13 | 39.16 |
| Bra003703.1-P | Field mustard | nucleus | 30.61 | 39.15 |
| KRH38181 | Soybean | nucleus | 24.36 | 38.98 |
| Zm00001d051316_P002 | Maize | nucleus | 33.04 | 38.77 |
| PGSC0003DMT400061942 | Potato | nucleus | 30.99 | 38.69 |
| AT1G76890.2 | Thale cress | nucleus | 28.32 | 38.61 |
| Bra015715.1-P | Field mustard | nucleus | 28.19 | 38.5 |
| CDY48546 | Canola | nucleus | 20.54 | 38.33 |
| KRH64101 | Soybean | nucleus | 24.36 | 38.2 |
| Solyc12g056510.1.1 | Tomato | nucleus | 31.38 | 37.79 |
| Solyc04g071360.2.1 | Tomato | nucleus | 31.12 | 37.31 |
| CDX87564 | Canola | nucleus | 19.26 | 35.36 |
| KRH70307 | Soybean | nucleus | 26.91 | 35.23 |
| KRG91651 | Soybean | nucleus | 28.19 | 35.08 |
| KRH08698 | Soybean | nucleus | 27.17 | 34.58 |
| KRH35147 | Soybean | nucleus | 11.1 | 30.53 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 21.68 | 30.3 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 21.43 | 30.05 |
| KRG96146 | Soybean | nucleus | 21.94 | 29.76 |
| KRH67857 | Soybean | nucleus | 21.56 | 29.04 |
| PGSC0003DMT400007016 | Potato | nucleus | 19.9 | 28.78 |
| Solyc09g009250.2.1 | Tomato | nucleus | 19.39 | 27.99 |
| Bra005777.1-P | Field mustard | nucleus | 20.41 | 27.92 |
| CDX70293 | Canola | nucleus | 20.28 | 27.85 |
| Bra009518.1-P | Field mustard | nucleus | 20.15 | 27.67 |
| AT5G03680.1 | Thale cress | nucleus | 20.79 | 27.58 |
| CDX80883 | Canola | nucleus | 17.86 | 27.45 |
| CDY11266 | Canola | nucleus | 17.73 | 27.25 |
| KRH32666 | Soybean | nucleus | 20.54 | 27.1 |
| Bra028824.1-P | Field mustard | nucleus | 20.28 | 26.95 |
| CDY44379 | Canola | nucleus | 20.15 | 26.83 |
| CDY10364 | Canola | nucleus | 17.22 | 26.63 |
| CDY04893 | Canola | nucleus | 16.84 | 26.04 |
| PGSC0003DMT400072404 | Potato | nucleus | 13.65 | 25.78 |
| AT3G10000.1 | Thale cress | nucleus | 15.43 | 25.16 |
| Zm00001d014938_P001 | Maize | nucleus | 20.66 | 24.4 |
| KRH34733 | Soybean | nucleus | 16.71 | 24.17 |
| KRG92051 | Soybean | nucleus | 16.33 | 23.84 |
| Zm00001d054080_P001 | Maize | nucleus | 21.17 | 23.25 |
| CDY45956 | Canola | cytosol | 1.79 | 19.72 |
Protein Annotations
| EnsemblPlants:Zm00001d032453_P001 | EnsemblPlants:Zm00001d032453_T001 | EnsemblPlantsGene:Zm00001d032453 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom |
| InterPro:SANT/Myb | PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:ONM05117.1 |
| SEG:seg | SMART:SM00717 | UniParc:UPI000844112D | UniProt:A0A1D6KQT7 | MapMan:15.5.20 | : |
Description
Trihelix transcription factor GT-2
Coordinates
chr1:+:227155946..227159833
Molecular Weight (calculated)
83159.8 Da
IEP (calculated)
6.573
GRAVY (calculated)
-0.813
Length
784 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQQHGGGG GGASGGGPAQ QFGAQQVEMP PPFSPAGGAG QRISLAEAPS PISSRPPAST PAKQYDELGA SGAGAVGFDA EGLAAAAAGE EGASGGSAGN
101: RWPRQETLEL LKIRSDMDAA FRDATLKGPL WEQVSRKLAE KGYNRSAKKC KEKFENVHKY YKRTKESRAG RNDGKTYRFF TQLEALHGTG AAPASVAASQ
201: VPPAISGGVS GAAGPLAVRL PAEPPPAVSG GVGMPMTTVG YPSFSTSNTE DYTDEDDSDD EGTEELVGGG GDERGKRKRV SEGGASVAGG GSGKMMRFFE
301: GLMKQVMERQ EAMQQRFLEA IEKREQDRMI REEAWRRQEM TRLAREQEIL AQERAMAASR DAAVLSFIQK ITGQTIPMPS IAAPTINAMP PPPHPKPPPP
401: QPHPTPIASA SPAPPPPQPP ASQTPPPLQQ QQPSPPQQKP PMPQQQSMDI VMVPAETTPH ADIPVHEGSS GGAASSRWPK AEVHALIQLR SNLDTRYQEV
501: GPKGPLWEEI SAGMRRMGYN RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYRNKAAL SSSSGVGAPV HANALPAPQE TVTVVTAAAP
601: ISQTPPPTQP SQSHHYAAKN GGTGNGNGGG ASEHGSRGMQ TQASNGSVGA SRFVGEGGGA ASAAKKPEDI MKEMMEQRQA PQQQQQTQAV VSGYNRIDGA
701: DSDNMDDDEE DYDEDDDDED VDGNKMQYEI QFQRQQPHHH QQHPNAVRPN AGAGGGNPPG TAAAPSTAAA PTTTAGSSFL GMVQ
101: RWPRQETLEL LKIRSDMDAA FRDATLKGPL WEQVSRKLAE KGYNRSAKKC KEKFENVHKY YKRTKESRAG RNDGKTYRFF TQLEALHGTG AAPASVAASQ
201: VPPAISGGVS GAAGPLAVRL PAEPPPAVSG GVGMPMTTVG YPSFSTSNTE DYTDEDDSDD EGTEELVGGG GDERGKRKRV SEGGASVAGG GSGKMMRFFE
301: GLMKQVMERQ EAMQQRFLEA IEKREQDRMI REEAWRRQEM TRLAREQEIL AQERAMAASR DAAVLSFIQK ITGQTIPMPS IAAPTINAMP PPPHPKPPPP
401: QPHPTPIASA SPAPPPPQPP ASQTPPPLQQ QQPSPPQQKP PMPQQQSMDI VMVPAETTPH ADIPVHEGSS GGAASSRWPK AEVHALIQLR SNLDTRYQEV
501: GPKGPLWEEI SAGMRRMGYN RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYRNKAAL SSSSGVGAPV HANALPAPQE TVTVVTAAAP
601: ISQTPPPTQP SQSHHYAAKN GGTGNGNGGG ASEHGSRGMQ TQASNGSVGA SRFVGEGGGA ASAAKKPEDI MKEMMEQRQA PQQQQQTQAV VSGYNRIDGA
701: DSDNMDDDEE DYDEDDDDED VDGNKMQYEI QFQRQQPHHH QQHPNAVRPN AGAGGGNPPG TAAAPSTAAA PTTTAGSSFL GMVQ
001: MSGNSEGLLE SSGGGVGGSV EEEKDMKMEE TGEGAGSGGN RWPRPETLAL LRIRSEMDKA FRDSTLKAPL WEEISRKMME LGYKRSSKKC KEKFENVYKY
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
101: HKRTKEGRTG KSEGKTYRFF EELEAFETLS SYQPEPESQP AKSSAVITNA PATSSLIPWI SSSNPSTEKS SSPLKHHHQV SVQPITTNPT FLAKQPSSTT
201: PFPFYSSNNT TTVSQPPISN DLMNNVSSLN LFSSSTSSST ASDEEEDHHQ VKSSRKKRKY WKGLFTKLTK ELMEKQEKMQ KRFLETLEYR EKERISREEA
301: WRVQEIGRIN REHETLIHER SNAAAKDAAI ISFLHKISGG QPQQPQQHNH KPSQRKQYQS DHSITFESKE PRAVLLDTTI KMGNYDNNHS VSPSSSRWPK
401: TEVEALIRIR KNLEANYQEN GTKGPLWEEI SAGMRRLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPLD SKTCPYFHQL EALYNERNKS GAMPLPLPLM
501: VTPQRQLLLS QETQTEFETD QREKVGDKED EEEGESEEDE YDEEEEGEGD NETSEFEIVL NKTSSPMDIN NNLFT
Arabidopsis Description
GT-2Trihelix transcription factor GT-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39117]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.