CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74283	nucleus
CDX91963	nucleus
CDY34697	nucleus
CDY37545	nucleus
CDY43267	nucleus
CDY55800	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03680.1	CDX74283	AT3G01090.2	25697797
AT5G03680.1	CDX91963	AT3G01090.2	25697797
AT5G03680.1	CDY34697	AT3G01090.2	25697797
AT5G03680.1	CDY37545	AT3G01090.2	25697797
AT5G03680.1	CDY43267	AT3G01090.2	25697797
AT5G03680.1	CDY55800	AT3G01090.2	25697797
AT5G03680.1	CDX74283	AT3G01090.2	25697797
AT5G03680.1	CDX91963	AT3G01090.2	25697797
AT5G03680.1	CDY34697	AT3G01090.2	25697797
AT5G03680.1	CDY37545	AT3G01090.2	25697797
AT5G03680.1	CDY43267	AT3G01090.2	25697797
AT5G03680.1	CDY55800	AT3G01090.2	25697797

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11266	Canola	nucleus	92.75	92.75
Bra005777.1-P	Field mustard	nucleus	93.53	83.25
CDY04893	Canola	nucleus	80.78	81.26
CDY10364	Canola	nucleus	80.59	81.07
CDY44379	Canola	nucleus	84.9	73.51
AT5G03680.1	Thale cress	nucleus	84.71	73.1
CDX70293	Canola	nucleus	81.57	72.85
PGSC0003DMT400072404	Potato	nucleus	35.29	43.37
KRG96146	Soybean	nucleus	46.86	41.35
VIT_08s0007g03820.t01	Wine grape	nucleus	44.31	40.43
KRH67857	Soybean	nucleus	46.08	40.38
PGSC0003DMT400007016	Potato	nucleus	41.57	39.11
Solyc09g009250.2.1	Tomato	nucleus	41.18	38.67
GSMUA_Achr8P07630_001	Banana	nucleus	29.22	37.44
KRH32666	Soybean	nucleus	42.75	36.7
CDX85981	Canola	nucleus	19.22	26.85
CDY45955	Canola	nucleus	21.37	24.77
CDX87564	Canola	nucleus	20.59	24.59
CDY65284	Canola	nucleus	24.12	22.2
CDX88320	Canola	nucleus	23.33	21.88
CDY45957	Canola	nucleus	20.59	21.52
CDY13568	Canola	nucleus	20.78	21.5
CDY62151	Canola	nucleus	22.16	20.73
CDX68080	Canola	nucleus	23.14	20.38
CDY48545	Canola	nucleus, plastid	22.35	20.07
CDX93785	Canola	nucleus	22.75	19.69
CDY71745	Canola	nucleus	21.76	19.41
Zm00001d032453_P001	Maize	nucleus	27.45	17.86
HORVU1Hr1G046940.4	Barley	nucleus	28.43	17.51
Zm00001d013849_P001	Maize	nucleus	26.67	17.5
TraesCS1D01G162400.1	Wheat	nucleus, plastid	27.65	17.26
TraesCS1A01G176700.2	Wheat	nucleus	27.65	17.26
TraesCS1B01G203300.2	Wheat	nucleus	27.45	17.2
EER91374	Sorghum	nucleus	26.67	16.85
CDY48546	Canola	nucleus	13.73	16.67
KXG40355	Sorghum	nucleus, plastid	25.49	16.65
HORVU4Hr1G089120.1	Barley	nucleus, plastid	25.49	16.39
TraesCS5A01G558200.1	Wheat	nucleus, plastid	25.1	16.31
Zm00001d027335_P001	Maize	nucleus	25.69	16.19
TraesCSU01G029700.1	Wheat	nucleus	24.9	16.14
CDY28914	Canola	nucleus	11.57	15.25
TraesCS4B01G396900.1	Wheat	nucleus	20.59	15.17
CDY17716	Canola	nucleus	10.2	14.99
CDY40550	Canola	nucleus	11.37	14.83
CDY05590	Canola	nucleus	17.25	14.72
CDY52482	Canola	nucleus	17.45	14.69
CDY52502	Canola	nucleus	17.06	14.57
CDX86194	Canola	nucleus	16.86	14.1
CDY44964	Canola	nucleus	9.02	11.95
CDX77787	Canola	nucleus	14.12	11.21
CDX85980	Canola	nucleus	3.92	9.43
CDX87563	Canola	nucleus	0.78	5.8
CDY45956	Canola	cytosol	0.78	5.63

Protein Annotations

EnsemblPlants:CDX80883	EnsemblPlantsGene:GSBRNA2T00134283001	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom	ncoils:Coil
PANTHER:PTHR21654	PANTHER:PTHR21654:SF5	PFAM:PF13837	PFscan:PS50090	ProteinID:CDX80883	ProteinID:CDX80883.1
SEG:seg	UniParc:UPI0004EDB13D	MapMan:15.5.20	:	:	:

Description

BnaC03g01370D

Coordinates

chrLK031823:+:625360..628237

Molecular Weight (calculated)

57731.3 Da

IEP (calculated)

7.710

GRAVY (calculated)

-0.947

Length

510 amino acids

Sequence
(BLAST)

001: MEDHHTQYGI PELRQLMKGE GRTTTTASPS TSHFPSDFLG FNLAPAAPPP PQHHRVHQFN TDPEMCFLPH GIHGLGGGSS TAGNNSNLNI STSGGGVRFS
101: GFLDGGGLGG SGGTGRWPRQ ETLTLLEIRS RLDHKFKEAN QKGPFWDEVS RIMSEEYGYQ RSGKKCREKF ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE
201: ALYGDSNNLV SFPNHNTQFM SSALHGFHTQ NAMNIPTTTS NIHEVDSSVH GFLHHQSLSI SNNNNSSELE LMTSSSDGND SDSRRKKKSW KAKIKEFIDV
301: NMKRLIERQD IWLEKLTKVI EDKEEQRMMK EEEWRKSEAA RVEQVHLFWA KERERMEARD VAVLEALQYL AGKTLIKPSC SSPEERINGN NEIQNNSENE
401: KWECISNGMR KEKKQINKRR KENSSSCGVY YPKTEENSIY IIQESGCNDN DKHHQMIEQG NVGSSTSNAA AGDLRGAMAA STNCFPFVMG DGDQNLWESY
501: SLRLSKGENQ

Best Arabidopsis Sequence Match ( AT3G10000.1 )
(BLAST)

001: MEDHQNHPQY GIEQPSSQFS SDLFGFNLVS APDQHHRLHF TDHEISLLPR GIQGLTVAGN NSNTITTIQS GGCVGGFSGF TDGGGTGRWP RQETLMLLEV
101: RSRLDHKFKE ANQKGPLWDE VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKSGRR QDGKNYRFFR QLEAIYGESK DSVSCYNNTQ FIMTNALHSN
201: FRASNIHNIV PHHQNPLMTN TNTQSQSLSI SNNFNSSSDL DLTSSSEGNE TTKREGMHWK EKIKEFIGVH MERLIEKQDF WLEKLMKIVE DKEHQRMLRE
301: EEWRRIEAER IDKERSFWTK ERERIEARDV AVINALQYLT GRALIRPDSS SPTERINGNG SDKMMADNEF ADEGNKGKMD KKQMNKKRKE KWSSHGGNHP
401: RTKENMMIYN NQETKINDFC RDDDQCHHEG YSPSNSKNAG TPSCSNAMAA STKCFPLLEG EGDQNLWEGY GLKQRKENNH Q

Arabidopsis Description

EDA31EDA31 [Source:UniProtKB/TrEMBL;Acc:A0A178VLV1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.