Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G350500.1 | nucleus |
| TraesCS1B01G364800.1 | nucleus |
| TraesCS1D01G353300.1 | nucleus |
| TraesCS3A01G282800.1 | nucleus |
| TraesCS3B01G316500.1 | nucleus |
| TraesCS3D01G282800.1 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 97.31 | 97.31 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 96.7 | 97.05 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 93.27 | 92.03 |
| Zm00001d032453_P001 | Maize | nucleus | 66.71 | 69.52 |
| Zm00001d013849_P001 | Maize | nucleus | 64.01 | 67.31 |
| EER91374 | Sorghum | nucleus | 66.1 | 66.91 |
| GSMUA_Achr11P... | Banana | nucleus | 41.98 | 53.68 |
| GSMUA_Achr8P11760_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 36.35 | 53.32 |
| GSMUA_Achr4P24780_001 | Banana | nucleus | 40.76 | 49.78 |
| GSMUA_Achr9P18800_001 | Banana | nucleus | 35.01 | 49.57 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 47.25 | 49.17 |
| GSMUA_Achr1P04100_001 | Banana | nucleus | 38.31 | 48.83 |
| GSMUA_Achr2P11910_001 | Banana | nucleus | 37.21 | 47.5 |
| GSMUA_Achr5P19950_001 | Banana | nucleus, plastid | 38.19 | 47.27 |
| CDY45955 | Canola | nucleus | 24.97 | 46.36 |
| TraesCS2A01G389200.1 | Wheat | nucleus | 42.23 | 46.12 |
| GSMUA_Achr4P29130_001 | Banana | nucleus | 39.17 | 45.78 |
| Bra015716.1-P | Field mustard | nucleus | 30.36 | 45.01 |
| KRH35148 | Soybean | cytosol, mitochondrion, nucleus | 10.77 | 44.67 |
| CDX88320 | Canola | nucleus | 29.74 | 44.67 |
| VIT_04s0044g00510.t01 | Wine grape | nucleus | 27.78 | 44.51 |
| CDY13568 | Canola | nucleus | 26.68 | 44.22 |
| CDY45957 | Canola | nucleus | 26.32 | 44.06 |
| Bra003702.1-P | Field mustard | nucleus | 24.11 | 43.01 |
| CDY65284 | Canola | nucleus | 29.13 | 42.96 |
| Bra008285.1-P | Field mustard | nucleus | 29.01 | 42.7 |
| Bra008286.1-P | Field mustard | nucleus | 26.56 | 41.97 |
| KRG91649 | Soybean | nucleus | 33.05 | 41.93 |
| AT1G76880.1 | Thale cress | nucleus | 30.48 | 41.29 |
| CDY48545 | Canola | nucleus, plastid | 28.52 | 41.02 |
| KRH35149 | Soybean | nucleus | 33.41 | 40.93 |
| CDX68080 | Canola | nucleus | 28.89 | 40.76 |
| Bra015715.1-P | Field mustard | nucleus | 28.4 | 40.42 |
| KRH70308 | Soybean | nucleus | 31.09 | 40.25 |
| TraesCS6A01G240200.1 | Wheat | nucleus | 32.8 | 40.18 |
| KRH08699 | Soybean | nucleus | 31.95 | 39.85 |
| AT1G76890.2 | Thale cress | nucleus | 28.03 | 39.83 |
| GSMUA_Achr2P00580_001 | Banana | nucleus | 34.15 | 39.8 |
| Solyc11g005380.1.1 | Tomato | nucleus | 24.11 | 39.8 |
| VIT_18s0072g00670.t01 | Wine grape | nucleus | 31.46 | 39.78 |
| CDY48546 | Canola | nucleus | 20.44 | 39.76 |
| PGSC0003DMT400061942 | Potato | nucleus | 29.99 | 39.01 |
| Bra003703.1-P | Field mustard | nucleus | 29.25 | 38.99 |
| PGSC0003DMT400010112 | Potato | nucleus | 23.99 | 38.97 |
| KRH53849 | Soybean | nucleus | 23.26 | 38.23 |
| Solyc12g056510.1.1 | Tomato | nucleus | 30.23 | 37.94 |
| Solyc04g071360.2.1 | Tomato | nucleus | 30.36 | 37.92 |
| KRH38181 | Soybean | nucleus | 22.4 | 37.35 |
| CDX87564 | Canola | nucleus | 19.22 | 36.77 |
| KRH64101 | Soybean | nucleus | 22.4 | 36.6 |
| KRG91651 | Soybean | nucleus | 27.66 | 35.87 |
| KRH70307 | Soybean | nucleus | 25.95 | 35.39 |
| KRH08698 | Soybean | nucleus | 26.19 | 34.74 |
| KRH35147 | Soybean | nucleus | 11.02 | 31.58 |
| VIT_13s0074g00400.t01 | Wine grape | nucleus | 20.69 | 30.12 |
| KRG96146 | Soybean | nucleus | 21.18 | 29.93 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 20.32 | 29.7 |
| KRH67857 | Soybean | nucleus | 20.56 | 28.87 |
| PGSC0003DMT400007016 | Potato | nucleus | 18.85 | 28.41 |
| Solyc09g009250.2.1 | Tomato | nucleus | 18.73 | 28.18 |
| CDX70293 | Canola | nucleus | 19.58 | 28.02 |
| Bra005777.1-P | Field mustard | nucleus | 19.58 | 27.92 |
| Bra009518.1-P | Field mustard | nucleus | 19.46 | 27.85 |
| CDX80883 | Canola | nucleus | 17.26 | 27.65 |
| AT5G03680.1 | Thale cress | nucleus | 19.95 | 27.58 |
| PGSC0003DMT400072404 | Potato | nucleus | 13.95 | 27.47 |
| CDY11266 | Canola | nucleus | 17.14 | 27.45 |
| CDY44379 | Canola | nucleus | 19.58 | 27.16 |
| Bra028824.1-P | Field mustard | nucleus | 19.58 | 27.12 |
| CDY10364 | Canola | nucleus | 16.52 | 26.63 |
| KRH32666 | Soybean | nucleus | 19.22 | 26.43 |
| CDY04893 | Canola | nucleus | 16.03 | 25.84 |
| AT3G10000.1 | Thale cress | nucleus | 14.81 | 25.16 |
| KRH34733 | Soybean | nucleus | 16.4 | 24.72 |
| KRG92051 | Soybean | nucleus | 15.91 | 24.21 |
| TraesCS6A01G013200.2 | Wheat | nucleus | 20.56 | 22.31 |
| CDY45956 | Canola | cytosol | 1.1 | 12.68 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G176700.2 | EnsemblPlantsGene:TraesCS1A01G176700 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF48 | PFAM:PF13837 | PFscan:PS50090 | SEG:seg | SMART:SM00717 |
| TIGR:cd12203 | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:317811200..317814470
Molecular Weight (calculated)
86926.1 Da
IEP (calculated)
6.527
GRAVY (calculated)
-0.856
Length
817 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQQQQPQH QGGGPGQQFG LHPPEMPPFS PSRSTGQQRI SMAEAPSPIS SRPPAPGPPP PQQQLNNELA GAGAVGFDEE ALAAGEEGLG GGAGGNRWPR
101: QETLALLKIR SDMDAAFRDA TLKGPLWEEV SRKLAEEGYR RNAKKCKEKF ENVHKYYKRT KDSRAGRNDG KTYRFFRQLE AMQSTSGVTA APMASAPPPA
201: TAVGVPGVVG PTALRPLAEP PPVGAAAAAT AGLPTPVVVG NLSFSTSNTE EYSDEDDSDD EGTDDMGGGA DERGKRKRTS EGGAAAGSGG EAGSGKMMRF
301: FEGLMKQVME RQEAMQQRFL EAIEKREQDR MIREEAWRRQ EMARLAREQE ILGQERAMAA TRDAAVLSFI QKITGQTIPM PSIAAQAITF MPPPPPSQPH
401: ATPIAYSAAP VHPRPPSSQP PATHSPPQPQ PSPRQQKPPT MPPVTPQPHK SPAPATPQLQ QQAPAVNSSC MDIVVAPSEA PHDSSGYDGS GGGSGPTSSR
501: WPKAEVHALI QLRSNLDMRY QEAGPKGPLW EEISAGMRRM GYNRSSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLEALYRNK AALGSPSGAG
601: GALALPPPAV HANAAPQERI EAFTVAAPIS QTAPQQPPVA KNDASNAGNG NGNGGGASAG VSGGAQRLAA SNGGSRFVFG EAGGDAAAKK PEGIMKETTM
701: EQRQPQPQPQ AAQQAAINSY NRTGGGGAES DNMDEDDEDE DDYEDEDEED DLDGNKTQYK IQFQGQQQHQ NQHQQHHHNV VRPNATSSGG GNPPGAAAPS
801: APAAATTTAG SFLGMVQ
101: QETLALLKIR SDMDAAFRDA TLKGPLWEEV SRKLAEEGYR RNAKKCKEKF ENVHKYYKRT KDSRAGRNDG KTYRFFRQLE AMQSTSGVTA APMASAPPPA
201: TAVGVPGVVG PTALRPLAEP PPVGAAAAAT AGLPTPVVVG NLSFSTSNTE EYSDEDDSDD EGTDDMGGGA DERGKRKRTS EGGAAAGSGG EAGSGKMMRF
301: FEGLMKQVME RQEAMQQRFL EAIEKREQDR MIREEAWRRQ EMARLAREQE ILGQERAMAA TRDAAVLSFI QKITGQTIPM PSIAAQAITF MPPPPPSQPH
401: ATPIAYSAAP VHPRPPSSQP PATHSPPQPQ PSPRQQKPPT MPPVTPQPHK SPAPATPQLQ QQAPAVNSSC MDIVVAPSEA PHDSSGYDGS GGGSGPTSSR
501: WPKAEVHALI QLRSNLDMRY QEAGPKGPLW EEISAGMRRM GYNRSSKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF HQLEALYRNK AALGSPSGAG
601: GALALPPPAV HANAAPQERI EAFTVAAPIS QTAPQQPPVA KNDASNAGNG NGNGGGASAG VSGGAQRLAA SNGGSRFVFG EAGGDAAAKK PEGIMKETTM
701: EQRQPQPQPQ AAQQAAINSY NRTGGGGAES DNMDEDDEDE DDYEDEDEED DLDGNKTQYK IQFQGQQQHQ NQHQQHHHNV VRPNATSSGG GNPPGAAAPS
801: APAAATTTAG SFLGMVQ
001: MMQLGGGTPT TTAAATTVTT ATAPPPQSNN NDSAATEAAA AAVGAFEVSE EMHDRGFGGN RWPRQETLAL LKIRSDMGIA FRDASVKGPL WEEVSRKMAE
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
101: HGYIRNAKKC KEKFENVYKY HKRTKEGRTG KSEGKTYRFF DQLEALESQS TTSLHHHQQQ TPLRPQQNNN NNNNNNNNSS IFSTPPPVTT VMPTLPSSSI
201: PPYTQQINVP SFPNISGDFL SDNSTSSSSS YSTSSDMEMG GGTATTRKKR KRKWKVFFER LMKQVVDKQE ELQRKFLEAV EKREHERLVR EESWRVQEIA
301: RINREHEILA QERSMSAAKD AAVMAFLQKL SEKQPNQPQP QPQPQQVRPS MQLNNNNQQQ PPQRSPPPQP PAPLPQPIQA VVSTLDTTKT DNGGDQNMTP
401: AASASSSRWP KVEIEALIKL RTNLDSKYQE NGPKGPLWEE ISAGMRRLGF NRNSKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ LDALYRERNK
501: FHSNNNIAAS SSSSGLVKPD NSVPLMVQPE QQWPPAVTTA TTTPAAAQPD QQSQPSEQNF DDEEGTDEEY DDEDEEEENE EEEGGEFELV PSNNNNNKTT
601: NNL
Arabidopsis Description
Duplicated homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C6K3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.