Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70293 | Canola | nucleus | 97.24 | 86.34 |
| CDY04893 | Canola | nucleus | 82.05 | 82.05 |
| CDY11266 | Canola | nucleus | 81.85 | 81.37 |
| CDX80883 | Canola | nucleus | 81.07 | 80.59 |
| AT5G03680.1 | Thale cress | nucleus | 85.8 | 73.6 |
| CDY44379 | Canola | nucleus | 85.21 | 73.34 |
| PGSC0003DMT400072404 | Potato | nucleus | 36.29 | 44.34 |
| VIT_08s0007g03820.t01 | Wine grape | nucleus | 46.35 | 42.04 |
| KRG96146 | Soybean | nucleus | 47.53 | 41.7 |
| KRH67857 | Soybean | nucleus | 46.75 | 40.72 |
| PGSC0003DMT400007016 | Potato | nucleus | 42.6 | 39.85 |
| Solyc09g009250.2.1 | Tomato | nucleus | 42.21 | 39.41 |
| KRH32666 | Soybean | nucleus | 44.58 | 38.05 |
| GSMUA_Achr8P07630_001 | Banana | nucleus | 29.78 | 37.94 |
| CDX85981 | Canola | nucleus | 19.13 | 26.58 |
| CDY45955 | Canola | nucleus | 20.91 | 24.09 |
| CDX87564 | Canola | nucleus | 20.12 | 23.89 |
| CDY45957 | Canola | nucleus | 21.3 | 22.13 |
| CDY13568 | Canola | nucleus | 21.5 | 22.11 |
| CDY65284 | Canola | nucleus | 23.87 | 21.84 |
| CDX88320 | Canola | nucleus | 22.49 | 20.96 |
| CDY62151 | Canola | nucleus | 22.09 | 20.55 |
| CDY48545 | Canola | nucleus, plastid | 22.29 | 19.89 |
| CDX68080 | Canola | nucleus | 22.68 | 19.86 |
| CDX93785 | Canola | nucleus | 22.88 | 19.69 |
| CDY71745 | Canola | nucleus | 21.89 | 19.41 |
| Zm00001d032453_P001 | Maize | nucleus | 26.63 | 17.22 |
| HORVU1Hr1G046940.4 | Barley | nucleus | 27.42 | 16.79 |
| CDY48546 | Canola | nucleus | 13.81 | 16.67 |
| Zm00001d013849_P001 | Maize | nucleus | 25.44 | 16.6 |
| TraesCS1D01G162400.1 | Wheat | nucleus, plastid | 26.63 | 16.52 |
| TraesCS1A01G176700.2 | Wheat | nucleus | 26.63 | 16.52 |
| TraesCS1B01G203300.2 | Wheat | nucleus | 26.43 | 16.46 |
| EER91374 | Sorghum | nucleus | 25.84 | 16.23 |
| KXG40355 | Sorghum | nucleus, plastid | 24.65 | 16.01 |
| TraesCS5A01G558200.1 | Wheat | nucleus, plastid | 24.26 | 15.67 |
| HORVU4Hr1G089120.1 | Barley | nucleus, plastid | 24.46 | 15.64 |
| Zm00001d027335_P001 | Maize | nucleus | 24.85 | 15.57 |
| TraesCSU01G029700.1 | Wheat | nucleus | 24.06 | 15.5 |
| TraesCS4B01G396900.1 | Wheat | nucleus | 20.32 | 14.88 |
| CDY05590 | Canola | nucleus | 17.55 | 14.88 |
| CDY40550 | Canola | nucleus | 11.24 | 14.58 |
| CDY52502 | Canola | nucleus | 17.16 | 14.57 |
| CDY28914 | Canola | nucleus | 11.05 | 14.47 |
| CDY52482 | Canola | nucleus | 16.57 | 13.86 |
| CDY17716 | Canola | nucleus | 9.47 | 13.83 |
| CDX86194 | Canola | nucleus | 15.98 | 13.28 |
| CDY44964 | Canola | nucleus | 9.47 | 12.47 |
| CDX77787 | Canola | nucleus | 13.61 | 10.75 |
| CDX85980 | Canola | nucleus | 3.35 | 8.02 |
| CDX87563 | Canola | nucleus | 0.79 | 5.8 |
| CDY45956 | Canola | cytosol | 0.79 | 5.63 |
Protein Annotations
| EnsemblPlants:CDY10364 | EnsemblPlantsGene:GSBRNA2T00032265001 | Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | ncoils:Coil |
| PANTHER:PTHR21654 | PANTHER:PTHR21654:SF5 | PFAM:PF13837 | PFscan:PS50090 | ProteinID:CDY10364 | ProteinID:CDY10364.1 |
| SEG:seg | UniParc:UPI0004EE52D5 | UniProt:A0A078FBI9 | MapMan:15.5.20 | : | : |
Description
BnaCnng02650DBnaCnng02650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBI9]
Coordinates
chrLK032003:-:56736..59586
Molecular Weight (calculated)
57622.7 Da
IEP (calculated)
8.005
GRAVY (calculated)
-1.102
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDHPSQYGI PELRQLMKGG GRTTSPSTSS HFPSDFFGFN LTAPPQQHRV QQFTTDHQEM GFLPHGIHGL GGSSSTTAGN NSNLNASTCG GGVGFGGFLD
101: GGGFSGGDGG ATGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL
201: YGDSNNLVSI PNHNTQFMSN ALHGFHSQNV TTTTPNIHSV DGLHGFHHQQ SLSLSNNYNS SEMELMTSSS EGNDSSSRRK KRSSWKAKIK EFIDVSMKRL
301: IERQDAWLEK LTKVIEDKEE QRMMKEEEWR KREAARVDKE HFFWAKERER MEARDVAVIE ALQYLTGKQL IKPLCSSPEE RNNENGSDQT MTTNNWEQIS
401: NGKMNEKKQI NKKRKENSSS CGVYYPRTEE NQIYNNQESG YNDNDQHHQK MNIEQGNNIG SSTSNANARN PSGTMEASTN CFPFFMGDGD QNLWESYGLR
501: LSKGENQ
101: GGGFSGGDGG ATGRWPRQET LTLLEIRSRL DHKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH YRFFRQLEAL
201: YGDSNNLVSI PNHNTQFMSN ALHGFHSQNV TTTTPNIHSV DGLHGFHHQQ SLSLSNNYNS SEMELMTSSS EGNDSSSRRK KRSSWKAKIK EFIDVSMKRL
301: IERQDAWLEK LTKVIEDKEE QRMMKEEEWR KREAARVDKE HFFWAKERER MEARDVAVIE ALQYLTGKQL IKPLCSSPEE RNNENGSDQT MTTNNWEQIS
401: NGKMNEKKQI NKKRKENSSS CGVYYPRTEE NQIYNNQESG YNDNDQHHQK MNIEQGNNIG SSTSNANARN PSGTMEASTN CFPFFMGDGD QNLWESYGLR
501: LSKGENQ
001: MDQDQHPQYG IPELRQLMKG GGRTTTTTPS TSSHFPSDFF GFNLAPVQPP PHRLHQFTTD QDMGFLPRGI HGLGGGSSTA GNNSNLNAST SGGGVGFSGF
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
101: LDGGGFGSGV GGDGGGTGRW PRQETLTLLE IRSRLDHKFK EANQKGPLWD EVSRIMSEEH GYQRSGKKCR EKFENLYKYY RKTKEGKAGR QDGKHYRFFR
201: QLEALYGDSN NLVSCPNHNT QFMSSALHGF HTQNPMNVTT TTSNIHNVDS VHGFHQSLSL SNNYNSSELE LMTSSSEGND SSSRRKKRSW KAKIKEFIDT
301: NMKRLIERQD VWLEKLTKVI EDKEEQRMMK EEEWRKIEAA RIDKEHLFWA KERARMEARD VAVIEALQYL TGKPLIKPLC SSPEERTNGN NEIRNNSETQ
401: NENGSDQTMT NNVCVKGSSS CWGEQEILKL MEIRTSMDST FQEILGGCSD EFLWEEIAAK LIQLGFDQRS ALLCKEKWEW ISNGMRKEKK QINKKRKDNS
501: SSCGVYYPRN EENPIYNNRE SGYNDNDPHQ INEQGNVGSS TSNANANANV TTGNPSGAMA ASTNCFPFFM GDGDQNLWES YGLRLSKEEN Q
Arabidopsis Description
PTLTrihelix transcription factor PTL [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.